RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CD47Q08722 323 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 TOP3AQ13472 1001 aaPredicted RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 PPA1Q15181 289 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 BEX5Q5H9J7 111 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 SFRP5Q5T4F7 317 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ZNF474Q6S9Z5 364 aaPredicted RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 C6orf89Q6UWU4 347 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 CYP2R1Q6VVX0 501 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 CCDC121Q6ZUS5 278 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 VTCN1Q7Z7D3 282 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 SPATA24Q86W54 205 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 RBM45Q8IUH3 476 aaKnown RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 KDM8Q8N371 416 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 SVOPQ8N4V2 548 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 FAM156AQ8NDB6 213 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 GPR32P1Q8NGA4 272 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 OR6S1Q8NH40 331 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 OR52N5Q8NH56 324 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 TAAR8Q969N4 342 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 S100PBPQ96BU1 408 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 PYURFQ96I23 114 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ALKBH3Q96Q83 286 aaPredicted RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 ZNF347Q96SE7 839 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ULBP2Q9BZM5 246 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 JKAMPQ9P055 326 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 RHCGQ9UBD6 479 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ABCD2Q9UBJ2 740 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 PRSS50Q9UI38 385 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ZNF229Q9UJW7 825 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 FLVCR1Q9Y5Y0 555 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 FLNCQ14315 2725 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 IGKV3D-15A0A087WSY6 115 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 HTR3EA5X5Y0 456 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 M0R1B8 84 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 M0R3G1 203 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 SMAD7O15105 426 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 ARPC2O15144 300 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 OR10H3O60404 316 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 E2F6O75461 281 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 PDE5AO76074 875 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 OR7A10O76100 309 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 HTR3BO95264 441 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 IGHG1P01857 330 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 FUT1P19526 365 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 PSMB1P20618 241 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 MPGP29372 298 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 NOS3P29474 1203 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 MSX2P35548 267 aaPredicted RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 CSNK1A1P48729 337 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 GZMMP51124 257 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 SLC16A1P53985 500 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 SH3BGRP55822 239 aaPredicted RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 PRPS1P60891 318 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 SLC17A1Q14916 467 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 TSC22D1Q15714 1073 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 SLC22A25Q6T423 547 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 TMEM108Q6UXF1 575 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 CREB3L2Q70SY1 520 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 OAFQ86UD1 273 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 CDH24Q86UP0 819 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 P2RY8Q86VZ1 359 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 LSRQ86X29 649 aaPredicted RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 ZDHHC21Q8IVQ6 265 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 RBM15BQ8NDT2 890 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 OR52J3Q8NH60 311 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 TMEM255BQ8WV15 326 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 ZNF566Q969W8 418 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 BPIFA2Q96DR5 249 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 RADILQ96JH8 1075 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 ADAD1Q96M93 576 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 WFIKKN1Q96NZ8 548 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 PIP5K1AQ99755 562 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 OR10A4Q9H209 315 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 GORASP2Q9H8Y8 452 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 RNF121Q9H920 327 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 MOV10Q9HCE1 1003 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 INIPQ9NRY2 104 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 DCAF13Q9NV06 445 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 FAIMQ9NVQ4 179 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 MRPL39Q9NYK5 338 aaKnown RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 RCE1Q9Y256 329 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 AMDHD2Q9Y303 409 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 TESMINQ9Y4I5 508 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 ENPP4Q9Y6X5 453 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 PTPN13Q12923 2485 aa7.11□□□□□ -1.27
USP40-216ENST00000485943 USP9XQ93008 2570 aaPredicted RBP7.11□□□□□ -1.27
USP40-216ENST00000485943 ZNF716A6NP11 495 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 J3KTA2 159 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 UBOX5O94941 541 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 RAB36O95755 333 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 HOXB6P17509 224 aaKnown RBP7.1□□□□□ -1.27
USP40-216ENST00000485943 PAX7P23759 505 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 CENPAP49450 140 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 SELENOPP49908 381 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 BIDP55957 195 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ROR2Q01974 943 aaKnown RBP7.1□□□□□ -1.27
USP40-216ENST00000485943 CAMK2DQ13557 499 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 FLOT2Q14254 428 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ZNF74Q16587 644 aa7.1□□□□□ -1.27
USP40-216ENST00000485943 ALG10Q5BKT4 473 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms