RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CDC42EP2O14613 210 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 OR8U9P0C7N5 309 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 ARRB1P49407 418 aaPredicted RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 RPS27AP62979 156 aaKnown RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 UBA52P62987 128 aaKnown RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 CDK3Q00526 305 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 MELKQ14680 651 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 HLXQ14774 488 aaPredicted RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 MPEG1Q2M385 716 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 C14orf28Q4W4Y0 310 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 PDZD11Q5EBL8 140 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 GLYATL3Q5SZD4 288 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 TMEM65Q6PI78 240 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 OR13C9Q8NGT0 318 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 FBLIM1Q8WUP2 373 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 YIPF5Q969M3 257 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 SCN2AQ99250 2005 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 A0A1B0GTH9 108 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 PAPLNO95428 1278 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 PDSS1Q5T2R2 415 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 MAMSTRQ6ZN01 415 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 KLHDC8BQ8IXV7 354 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 SLC35F3Q8IY50 421 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 TCTEX1D2Q8WW35 142 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 SLAMF9Q96A28 289 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 APMAPQ9HDC9 416 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 PUS1Q9Y606 427 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP42-206ENST00000479544 IFITM5A6NNB3 132 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 SYT5O00445 386 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 MTRF1O75570 445 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 PTBP1P26599 531 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP42-206ENST00000479544 BSGP35613 385 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 MRPS10P82664 201 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 AWAT2Q6E213 333 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 FAM122BQ7Z309 247 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 KDM8Q8N371 416 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 SMIM4Q8WVI0 70 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 FAM71F1Q96KD3 344 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 KLHL15Q96M94 604 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 SELENOIQ9C0D9 397 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 GREB1LQ9C091 1923 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 A0A0A6YYC8 382 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 OR5H14A6NHG9 310 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 I3L1I5 382 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 ERCC1P07992 297 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 MAOBP27338 520 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 PCBP3P57721 371 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 CDK5Q00535 292 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 ZXDCQ2QGD7 858 aaPredicted RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 Q499Y3 187 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 TMEM31Q5JXX7 168 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 MFSD12Q6NUT3 480 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 ABHD17CQ6PCB6 329 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 NRSN1Q8IZ57 195 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 PNLDC1Q8NA58 520 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 OR5T3Q8NGG3 340 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 OR5K2Q8NHB8 316 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 SULT4A1Q9BR01 284 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 ADAT1Q9BUB4 502 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 SLC38A1Q9H2H9 487 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 PRTFDC1Q9NRG1 225 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 INPP5EQ9NRR6 644 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 MSRAQ9UJ68 235 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 TMEM235A6NFC5 223 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 GPRIN2O60269 458 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 PRPH2P23942 346 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 CD80P33681 288 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 NR0B1P51843 470 aaKnown RBP12.44□□□□□ -0.42
USP42-206ENST00000479544 TAS2R19P59542 299 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 FXYD4P59646 89 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 DEFB103AP81534 67 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 GPNMBQ14956 572 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 CHRFAM7AQ494W8 412 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 SLC22A6Q4U2R8 563 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 TMEM71Q6P5X7 295 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 ZNF679Q8IYX0 411 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 OR4C16Q8NGL9 310 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 B3GALT1Q9Y5Z6 326 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 URGCP-MRPS24S4R325 110 aa12.44□□□□□ -0.42
USP42-206ENST00000479544 TMEM150CB9EJG8 249 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 GPR31O00270 319 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 TPPPO94811 219 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 IGF2P01344 180 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 GP1BBP13224 206 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 GDI1P31150 447 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SNTB1Q13884 538 aaKnown RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 VN1R2Q8NFZ6 395 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 OR5T1Q8NG75 326 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 OR5D18Q8NGL1 313 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SLC6A18Q96N87 628 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 C6orf106Q9H6K1 298 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 MEPEQ9NQ76 525 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 CYB5R1Q9UHQ9 305 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 ZNF223Q9UK11 482 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 SIRT4Q9Y6E7 314 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 A0A0D9SG52 128 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 OR2W5A6NFC9 320 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 LDOC1O95751 146 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 AGFG1P52594 562 aaKnown RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 FLI1Q01543 452 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms