RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NKPD1Q17RQ9 610 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 MMEL1Q495T6 779 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 PHYHD1Q5SRE7 291 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 ZNF813Q6ZN06 617 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 TREML1Q86YW5 311 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 OR52P1PQ8NH57 321 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 APOPT1Q96IL0 206 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 MKS1Q9NXB0 559 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 TAAR3PQ9P1P4 343 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 B3GAT1Q9P2W7 334 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 SEC14L4Q9UDX3 406 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 GPR160Q9UJ42 338 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 POFUT2Q9Y2G5 429 aa14.67□□□□□ -0.06
VIM-204ENST00000478746 ARHGAP32A7KAX9 2087 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 CCDC154A6NI56 674 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 AKAP8O43823 692 aaKnown RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 PRG2P13727 222 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 PRTN3P24158 256 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 LSP1P33241 339 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 RAD52P43351 418 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 AQP5P55064 265 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 SELENOVP59797 346 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 RAB1AP62820 205 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 TEKQ02763 1124 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 CHI3L2Q15782 390 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 LIN52Q52LA3 116 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 SPANXN4Q5MJ08 99 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 CARD17Q5XLA6 110 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 TMEM154Q6P9G4 183 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 ZNF836Q6ZNA1 936 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 TMEM123Q8N131 208 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 TRIML2Q8N7C3 387 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 SIGLECL1Q8N7X8 197 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 DVL3Q92997 716 aaPredicted RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 TESCQ96BS2 214 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 KTI12Q96EK9 354 aaPredicted RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 PPP1R36Q96LQ0 422 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 DUX5Q96PT3 197 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 PTDSS2Q9BVG9 487 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 C1QTNF5Q9BXJ0 243 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 DENND2DQ9H6A0 471 aaPredicted RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 AKTIPQ9H8T0 292 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 HINT3Q9NQE9 182 aaKnown RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 SLC17A7Q9P2U7 560 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.66□□□□□ -0.06
VIM-204ENST00000478746 OPN4Q9UHM6 478 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 V9GYY5 206 aaPredicted RBP14.66□□□□□ -0.06
VIM-204ENST00000478746 DSPPQ9NZW4 1301 aa14.66□□□□□ -0.06
VIM-204ENST00000478746 POM121CA8CG34 1229 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 C17orf100A8MU93 164 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 AIM2O14862 343 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 RAB36O95755 333 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 FSHBP01225 129 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 IGHV2-5P01817 119 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 ZFP36P26651 326 aaKnown RBP14.65□□□□□ -0.06
VIM-204ENST00000478746 S100A3P33764 101 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 CRYBB2P43320 205 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 GIPRP48546 466 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 EGR4Q05215 589 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 COX20Q5RI15 118 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 ZNF621Q6ZSS3 439 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 C20orf196Q8IYI0 205 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 CLIP4Q8N3C7 705 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 LRRC58Q96CX6 371 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 CCDC115Q96NT0 180 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 ZIM3Q96PE6 472 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 B3GAT2Q9NPZ5 323 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 SLC7A8Q9UHI5 535 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 BTNL2Q9UIR0 455 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 ZNF232Q9UNY5 417 aa14.65□□□□□ -0.06
VIM-204ENST00000478746 IGHV1-69-2A0A0G2JMI3 117 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 LOC102725191A0A1B0GVB3 256 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 TLDC2A0PJX2 215 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 M0R082 166 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 OR2T1O43869 369 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 IL13RA1P78552 427 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 RAB39AQ14964 217 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 LARS2Q15031 903 aaKnown RBP14.64□□□□□ -0.07
VIM-204ENST00000478746 DPY19L1Q2PZI1 675 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 PCGF3Q3KNV8 242 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 RGS7BPQ6MZT1 257 aaPredicted RBP14.64□□□□□ -0.07
VIM-204ENST00000478746 H1FNTQ75WM6 255 aaPredicted RBP14.64□□□□□ -0.07
VIM-204ENST00000478746 ZNF627Q7L945 461 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 LRRC34Q8IZ02 419 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 ZNF417Q8TAU3 575 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 LRR1Q96L50 414 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 PANX1Q96RD7 426 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 ZNF587Q96SQ5 575 aaPredicted RBP14.64□□□□□ -0.07
VIM-204ENST00000478746 MED29Q9NX70 200 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 FBXL3Q9UKT7 428 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 ZNF443Q9Y2A4 671 aaPredicted RBP14.64□□□□□ -0.07
VIM-204ENST00000478746 WIPI2Q9Y4P8 454 aa14.64□□□□□ -0.07
VIM-204ENST00000478746 CLDN25C9JDP6 229 aa14.63□□□□□ -0.07
VIM-204ENST00000478746 TPD52L2O43399 206 aaKnown RBP14.63□□□□□ -0.07
VIM-204ENST00000478746 TRAF3IP2O43734 574 aaPredicted RBP14.63□□□□□ -0.07
VIM-204ENST00000478746 CLPTM1O96005 669 aa14.63□□□□□ -0.07
VIM-204ENST00000478746 NUDT17P0C025 328 aa14.63□□□□□ -0.07
VIM-204ENST00000478746 B4GALT1P15291 398 aa14.63□□□□□ -0.07
VIM-204ENST00000478746 CLNS1AP54105 237 aaKnown RBP14.63□□□□□ -0.07
VIM-204ENST00000478746 MFSD13AQ14CX5 517 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms