RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NIPAL3Q6P499 406 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 ZNF841Q6ZN19 808 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 ETV3LQ6ZN32 361 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CREB3L2Q70SY1 520 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 GPAT4Q86UL3 456 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 KLBQ86Z14 1044 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 COX18Q8N8Q8 333 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CDRT4Q8N9R6 151 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SVIPQ8NHG7 77 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SYNPRQ8TBG9 265 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SNX33Q8WV41 574 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 LRTOMTQ8WZ04 291 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TFAP2CQ92754 450 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CDS1Q92903 461 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 LHX4Q969G2 390 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CFAP36Q96G28 342 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 APIPQ96GX9 242 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 MPP4Q96JB8 637 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 EBPLQ9BY08 206 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TRIM15Q9C019 465 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SIRPDQ9H106 197 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 RHOJQ9H4E5 214 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 NOL11Q9H8H0 719 aaKnown RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 ZNF702PQ9H963 129 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SERINC1Q9NRX5 453 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 GIMAP4Q9NUV9 329 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CHCHD3Q9NX63 227 aaKnown RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 TAS2R7Q9NYW3 318 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 GRHL1Q9NZI5 618 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SLC7A8Q9UHI5 535 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TMCC3Q9ULS5 477 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TRAPPC4Q9Y296 219 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SORL1Q92673 2214 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 HMX2A2RU54 273 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ANKRD61A6NGH8 418 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 LIPT2A6NK58 231 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ZNF99A8MXY4 864 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 GTPBP1O00178 669 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 P2RY10O00398 339 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 EIF4E2O60573 245 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 EIF1BO60739 113 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 CYP7B1O75881 506 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 KRT14P02533 472 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 CD55P08174 381 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 IFI6P09912 130 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 UBTFL6P0CB48 400 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 PRPS2P11908 318 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 RPS2P15880 293 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 VAMP1P23763 118 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 PAX6P26367 422 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 MDH2P40926 338 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 APOBEC1P41238 236 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 HTR6P50406 440 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ATP12AP54707 1039 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 SLC35A1P78382 337 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 POU6F2P78424 691 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 HOXA4Q00056 320 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 SLC3A1Q07837 685 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 HSPB3Q12988 150 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ZNF385BQ569K4 471 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 FAM201AQ5SY85 155 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 SEL1L2Q5TEA6 688 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 WDR25Q64LD2 544 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 FAM71E1Q6IPT2 247 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 C11orf88Q6PI97 169 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 LYPD2Q6UXB3 125 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 Q6ZS46 218 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 CMC1Q7Z7K0 106 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 RNF130Q86XS8 419 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 IQCF2Q8IXL9 164 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ZNF101Q8IZC7 436 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 CENPLQ8N0S6 344 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 TMEM123Q8N131 208 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 KDM8Q8N371 416 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 RPP25LQ8N5L8 163 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 ZNF614Q8N883 585 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 FAM71CQ8NEG0 241 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 MNS1Q8NEH6 495 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 OR4F6Q8NGB9 312 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 STAG3L4Q8TBR4 150 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 C17orf50Q8WW18 174 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 IPCEF1Q8WWN9 437 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 LINC00476Q8WZB0 136 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 CIDECQ96AQ7 238 aaPredicted RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 ITCHQ96J02 903 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 WDFY2Q96P53 400 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 MS4A4EQ96PG1 132 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ARHGDIGQ99819 225 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 SF3B5Q9BWJ5 86 aaKnown RBP3.91□□□□□ -1.78
USP4-209ENST00000475873 BTBD2Q9BX70 525 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ACPTQ9BZG2 426 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 WNT10AQ9GZT5 417 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 MEGF9Q9H1U4 602 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 MSL2Q9HCI7 577 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 SLCO1C1Q9NYB5 712 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 B3GAT1Q9P2W7 334 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 RABL2BQ9UNT1 228 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 CHMP2BQ9UQN3 213 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 DTNAQ9Y4J8 743 aa3.91□□□□□ -1.78
USP4-209ENST00000475873 ANGPTL3Q9Y5C1 460 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms