RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 RETREG3Q86VR2 466 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 RBM45Q8IUH3 476 aaKnown RBP6.07□□□□□ -1.44
HDAC3-207ENST00000475549 GOLGA6L1Q8N7Z2 621 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 SMYD1Q8NB12 490 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 GPR32P1Q8NGA4 272 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 OR4D11Q8NGI4 311 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 FGFBP3Q8TAT2 258 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 DNAJA4Q8WW22 397 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-207ENST00000475549 RNF166Q96A37 237 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-207ENST00000475549 SPDL1Q96EA4 605 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 ZNF317Q96PQ6 595 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-207ENST00000475549 VRK1Q99986 396 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-207ENST00000475549 CCDC28BQ9BUN5 200 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 BEX2Q9BXY8 128 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 BPESC1Q9GZL8 116 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 TMEM38AQ9H6F2 299 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 MED29Q9NX70 200 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 CDC42EP3Q9UKI2 254 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 CR1P17927 2039 aa6.07□□□□□ -1.44
HDAC3-207ENST00000475549 LOC100289279A0A1B0GTE1 492 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SH3PXD2BA1X283 911 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 TMEM247A6NEH6 219 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 C5orf58C9J3I9 102 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LYNX1G3V0Z9 82 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 M0QX08 132 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 M0R3H8 397 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 NDUFS8O00217 210 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 POLR3GO15318 223 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LMX1BO60663 402 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LILRA1O75019 489 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SLC43A1O75387 559 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 PDE5AO76074 875 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 STAMBPO95630 424 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 IFNA2P01563 188 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 CSF3P09919 207 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LYNX1P0DP58 116 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ZNF14P17017 642 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 NPR2P20594 1047 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 NR4A1P22736 598 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SLC6A2P23975 617 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 GIFP27352 417 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ARR3P36575 388 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 PPOXP50336 477 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 PDLIM4P50479 330 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 GZMMP51124 257 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SH3BGRP55822 239 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SNRPD2P62316 118 aaKnown RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 PIGFQ07326 219 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 NPRL3Q12980 569 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 C1DQ13901 141 aaKnown RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SCARB2Q14108 478 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 TUSC1Q2TAM9 212 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 KRTAP24-1Q3LI83 254 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 AGKQ53H12 422 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 FAM120AOSQ5T036 256 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 AGBL2Q5U5Z8 902 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LRFN4Q6PJG9 635 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 IL17RELQ6ZVW7 336 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SLC46A3Q7Z3Q1 461 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 PXKQ7Z7A4 578 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 CDK20Q8IZL9 346 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SVOPLQ8N434 492 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LRRC17Q8N6Y2 441 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SCAIQ8N9R8 606 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ADPRHL1Q8NDY3 354 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 OR4F15Q8NGB8 312 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 OR6T1Q8NGN1 323 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 OR6S1Q8NH40 331 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 KCTD12Q96CX2 325 aaKnown RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 SLC47A1Q96FL8 570 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 THOC1Q96FV9 657 aaKnown RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 LRR1Q96L50 414 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ARHGDIGQ99819 225 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 CPPED1Q9BRF8 314 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 RAD21L1Q9H4I0 556 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ZNF385DQ9H6B1 395 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 ZNF442Q9H7R0 627 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 MRPL39Q9NYK5 338 aaKnown RBP6.06□□□□□ -1.44
HDAC3-207ENST00000475549 TAS2R5Q9NYW4 299 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 RPS6KB2Q9UBS0 482 aa6.06□□□□□ -1.44
HDAC3-207ENST00000475549 hCG_2039718K7EN88 272 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 TGFAP01135 160 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 OPN1SWP03999 348 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 ADRA2AP08913 450 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 PATE4P0C8F1 98 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 DAOP14920 347 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 B4GALT1P15291 398 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 ZNF23P17027 643 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 CD247P20963 164 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 AHCYP23526 432 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 PAX7P23759 505 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 COL8A2P25067 703 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 GIPRP48546 466 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 ATP4BP51164 291 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 SEC24CP53992 1094 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 RGS8P57771 180 aaPredicted RBP6.05□□□□□ -1.44
HDAC3-207ENST00000475549 MTPNP58546 118 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 POU3F1Q03052 451 aaPredicted RBP6.05□□□□□ -1.44
HDAC3-207ENST00000475549 PMS2P3Q13401 168 aa6.05□□□□□ -1.44
HDAC3-207ENST00000475549 CAMK2DQ13557 499 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms