RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HMGB1P1B2RPK0 211 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 RPL36A-HNRNPH2H7BZ11 118 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 hCG_2039718K7EN88 272 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 RAB36O95755 333 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 UMPSP11172 480 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 APEHP13798 732 aaKnown RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 HOXB9P17482 250 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 GPX2P18283 190 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 GALK2Q01415 458 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 PUDPQ08623 228 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 ADIPOQQ15848 244 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 SWI5Q1ZZU3 235 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 SWT1Q5T5J6 900 aaKnown RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 GKAP1Q5VSY0 366 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF813Q6ZN06 617 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 MDP1Q86V88 176 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 ADPRHL1Q8NDY3 354 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 IL17RDQ8NFM7 739 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 VANGL1Q8TAA9 524 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 PLK3Q9H4B4 646 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 B3GAT1Q9P2W7 334 aa15.23■□□□□ 0.03
COL7A1-206ENST00000466591 CRNNQ9UBG3 495 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-206ENST00000466591 IGKV1D-42A0A075B6H8 117 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 A0A0B4J2E0 115 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 A0A1B0GX12 115 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 LOC390937A0A1W2PQ73 354 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 SLC35F4A4IF30 521 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 CPSF4LA6NMK7 179 aaKnown RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 C11orf98E9PRG8 122 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 M0R3H8 397 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF432O94892 652 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 OPN1SWP03999 348 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 HIST1H2ABP04908 130 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 CELA3BP08861 270 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 ADORA3P0DMS8 318 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 HNF1AP20823 631 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 CDH12P55289 794 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 MTPNP58546 118 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 PIGFQ07326 219 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 RBBP4Q09028 425 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 SNTB2Q13425 540 aaKnown RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 CAMK2DQ13557 499 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 DAG1Q14118 895 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 GSG1Q2KHT4 349 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 TRMT5Q32P41 509 aaKnown RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 TTMPQ5BVD1 217 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 INTS11Q5TA45 600 aaKnown RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 FAM166AQ6J272 317 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 KRT80Q6KB66 452 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 TTC33Q6PID6 262 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 HIST3H2AQ7L7L0 130 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 HDXQ7Z353 690 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 SLC30A8Q8IWU4 369 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 C10orf111Q8N326 155 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 SVOPLQ8N434 492 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 FAM169BQ8N8A8 192 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 NUP37Q8NFH4 326 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 HIST1H2ACQ93077 130 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 MAGEB18Q96M61 343 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 CPPED1Q9BRF8 314 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 IKZF5Q9H5V7 419 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 NPHS2Q9NP85 383 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 MED29Q9NX70 200 aa15.22■□□□□ 0.03
COL7A1-206ENST00000466591 MRPL39Q9NYK5 338 aaKnown RBP15.22■□□□□ 0.03
COL7A1-206ENST00000466591 A0A0G2JND7 137 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 LOC102725191A0A1B0GVB3 256 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 TRAF3IP2O43734 574 aaPredicted RBP15.21■□□□□ 0.03
COL7A1-206ENST00000466591 LMX1BO60663 402 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 ENTPD5O75356 428 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 MT-ATP6P00846 226 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 IGKV3-15P01624 115 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 C8BP07358 591 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 FAM157CP0CG43 387 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 CALCRP30988 508 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 THBS4P35443 961 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 NR4A2P43354 598 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 PTDSS1P48651 473 aaKnown RBP15.21■□□□□ 0.03
COL7A1-206ENST00000466591 CSNK1A1P48729 337 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 PPOXP50336 477 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 EFNB3Q15768 340 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF613Q6PF04 617 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 PATL1Q86TB9 770 aaKnown RBP15.21■□□□□ 0.03
COL7A1-206ENST00000466591 C20orf196Q8IYI0 205 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 OR6S1Q8NH40 331 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 TMEM43Q9BTV4 400 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF442Q9H7R0 627 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 CMAHPQ9Y471 501 aa15.21■□□□□ 0.03
COL7A1-206ENST00000466591 LOC100289279A0A1B0GTE1 492 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 M0QX08 132 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 KPNA4O00629 521 aaPredicted RBP15.2■□□□□ 0.02
COL7A1-206ENST00000466591 RNF13O43567 381 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 CHP2O43745 196 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 MFN2O95140 757 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 IGLV1-44P01699 117 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 HLA-HP01893 362 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 BGLAPP02818 100 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 HLA-DOBP13765 273 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 B4GALT1P15291 398 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 CD247P20963 164 aa15.2■□□□□ 0.02
COL7A1-206ENST00000466591 MST1LQ2TV78 715 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms