RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 NTMQ9P121 344 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 ABRACLQ9P1F3 81 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 ZNF175Q9Y473 711 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 OSMP13725 252 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 ABOP16442 354 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 RAB4AP20338 218 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 MC3RP41968 323 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 OR1E2P47887 323 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 CAMLGP49069 296 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 CYB561P49447 251 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 ZNF84P51523 738 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 IL10RAQ13651 578 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 KCTD9Q7L273 389 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 RCBTB1Q8NDN9 531 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 OR2I1PQ8NGU4 316 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 CNRIP1Q96F85 164 aaPredicted RBP7.05□□□□□ -1.28
USP54-210ENST00000466048 OCEL1Q9H607 264 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 VNN3Q9NY84 501 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 GPR83Q9NYM4 423 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 ACAD8Q9UKU7 415 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 KNTC1P50748 2209 aa7.05□□□□□ -1.28
USP54-210ENST00000466048 TEX13DA0A0J9YY54 714 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 IMPA2O14732 288 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TGOLN2O43493 480 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 STK17BO94768 372 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SPDEFO95238 335 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ST6GAL1P15907 406 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 HOXD11P31277 338 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 EIF1P41567 113 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 ASAH1Q13510 395 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ZNF674Q2M3X9 581 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 FAM205BPQ63HN1 556 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 MFSD12Q6NUT3 480 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SLC16A9Q7RTY1 509 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR6N1Q8NGY5 312 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 FLVCR1-AS1Q8TAF5 88 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SCPEP1Q9HB40 452 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ACER3Q9NUN7 267 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 GNG8Q9UK08 70 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 C19orf53Q9UNZ5 99 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 NPIPA2E9PIF3 369 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 NPIPA3F8WFD2 350 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PRKCAP17252 672 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 NFYAP23511 347 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 CDK2P24941 298 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ALDH3B1P43353 468 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TGM4P49221 684 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PRSS53Q2L4Q9 553 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 RPS26P11Q5JNZ5 115 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 HIST2H3PS2Q5TEC6 136 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OGFOD3Q6PK18 319 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SMARCD3Q6STE5 483 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SLC46A3Q7Z3Q1 461 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR2T33Q8NG76 320 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR52P1PQ8NH57 321 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 MCHR1Q99705 422 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 LMF2Q9BU23 707 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 NAA50Q9GZZ1 169 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 OR2S2Q9NQN1 319 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PLCXD1Q9NUJ7 323 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TVP23AA6NH52 213 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 HRO43593 1189 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SCO2O43819 266 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 FMO6PO60774 539 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 LGI1O95970 557 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ATP1B1P05026 303 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 THBS1P07996 1170 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SERPINF1P36955 418 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 GZMKP49863 264 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PDX1P52945 283 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 EEF1A1P68104 462 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 TGFBR3Q03167 851 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 NNATQ16517 81 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 EEF1A1P5Q5VTE0 462 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PXKQ7Z7A4 578 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 CMIPQ8IY22 773 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ZNF619Q8N2I2 560 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR2L13Q8N349 312 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR5T3Q8NGG3 340 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 STT3BQ8TCJ2 826 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ELP5Q8TE02 316 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TTC9Q92623 222 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TAAR8Q969N4 342 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 RRNAD1Q96FB5 475 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 LCORQ96JN0 433 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 ZNF681Q96N22 645 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 C12orf57Q99622 126 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 OR10A4Q9H209 315 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 KLK10O43240 276 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 GCM2O75603 506 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 ADRB1P08588 477 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 CHATP28329 748 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PIGAP37287 484 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 IDH3GP51553 393 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 SSPNQ14714 243 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 SYPL1Q16563 259 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 ARHGAP11BQ3KRB8 267 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 RNASE10Q5GAN6 216 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 FAM199XQ6PEV8 388 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms