RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FAM214BQ7L5A3 538 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 GALNT5Q7Z7M9 940 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 FJX1Q86VR8 437 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 ZIC4Q8N9L1 334 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 GPX7Q96SL4 187 aaPredicted RBP14.03□□□□□ -0.16
USP40-206ENST00000443711 SLC29A1Q99808 456 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 ENKD1Q9H0I2 346 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 TXNIPQ9H3M7 391 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 EGLN3Q9H6Z9 239 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 TBC1D23Q9NUY8 699 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 PARPBPQ9NWS1 579 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 TMEFF2Q9UIK5 374 aaPredicted RBP14.03□□□□□ -0.16
USP40-206ENST00000443711 NOSIPQ9Y314 301 aaKnown RBP14.03□□□□□ -0.16
USP40-206ENST00000443711 PCNX1Q96RV3 2341 aa14.03□□□□□ -0.16
USP40-206ENST00000443711 HIVEP3Q5T1R4 2406 aa14.02□□□□□ -0.16
USP40-206ENST00000443711 ALPK2Q86TB3 2170 aa14.02□□□□□ -0.16
USP40-206ENST00000443711 NPIPB13A6NJU9 1138 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 NPIPB4C9JG80 1138 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 MCIDASD6RGH6 385 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 MITFO75030 526 aaPredicted RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 SOX14O95416 240 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 BCL10O95999 233 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 CD14P08571 375 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 IFNGR1P15260 489 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 CDH2P19022 906 aaPredicted RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 POU1F1P28069 291 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 PEX2P28328 305 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 AGTR1P30556 359 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 DAP3P51398 398 aaKnown RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 RPS6KA3P51812 740 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 RAD23AP54725 363 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 CLDN17P56750 224 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 ESRRGP62508 458 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 ERVK-25P63136 954 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 SIRPAP78324 504 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 GUSBP1Q15486 140 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 SLC36A3Q495N2 470 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 AAED1Q7RTV5 226 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 IGFN1Q86VF2 1251 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 PACRGLQ8N7B6 248 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 CNEP1R1Q8N9A8 125 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 TEX47Q8TBZ9 253 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 TMEM45BQ96B21 275 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 TXNDC15Q96J42 360 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 ADAD1Q96M93 576 aaKnown RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 ZNF385AQ96PM9 386 aaKnown RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 KATNB1Q9BVA0 655 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 IFT27Q9BW83 186 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 TSSK6Q9BXA6 273 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 POLDIP3Q9BY77 421 aaKnown RBP14.02□□□□□ -0.17
USP40-206ENST00000443711 NRIP3Q9NQ35 241 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 IL20RAQ9UHF4 553 aa14.02□□□□□ -0.17
USP40-206ENST00000443711 DIDO1Q9BTC0 2240 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 A0A0G2JNJ9 132 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 ZNF726A6NNF4 738 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 IDH3BO43837 385 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 MRPL33O75394 65 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 IL18BPO95998 194 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 IGHMP01871 453 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 IGFBP1P08833 259 aaPredicted RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 APEHP13798 732 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 OPRM1P35372 400 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 KIR2DL2P43627 348 aaPredicted RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 CRISP1P54107 249 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 RPL27P61353 136 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 FOXF2Q12947 444 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 ACKR1Q16570 336 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 GPR139Q6DWJ6 353 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 NCCRP1Q6ZVX7 275 aaPredicted RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 NUFIP2Q7Z417 695 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 HDDC2Q7Z4H3 204 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 NAXEQ8NCW5 288 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 OR8D4Q8NGM9 314 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 OR6K3Q8NGY3 331 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 SFXN3Q9BWM7 321 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 PLA2G12AQ9BZM1 189 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 VCXQ9H320 206 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 MED29Q9NX70 200 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 GRHPRQ9UBQ7 328 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 Q9UFV3 132 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 ZNF346Q9UL40 294 aaKnown RBP14.01□□□□□ -0.17
USP40-206ENST00000443711 BAIAP2Q9UQB8 552 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 RCE1Q9Y256 329 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 IER3IP1Q9Y5U9 82 aa14.01□□□□□ -0.17
USP40-206ENST00000443711 SLC35F4A4IF30 521 aa14□□□□□ -0.17
USP40-206ENST00000443711 A6NIZ1 184 aa14□□□□□ -0.17
USP40-206ENST00000443711 IMPA2O14732 288 aa14□□□□□ -0.17
USP40-206ENST00000443711 ARPC3O15145 178 aa14□□□□□ -0.17
USP40-206ENST00000443711 TNFSF13O75888 250 aa14□□□□□ -0.17
USP40-206ENST00000443711 PPP1R3DO95685 299 aa14□□□□□ -0.17
USP40-206ENST00000443711 GIPRP48546 466 aa14□□□□□ -0.17
USP40-206ENST00000443711 SMSP52788 366 aa14□□□□□ -0.17
USP40-206ENST00000443711 BIDP55957 195 aa14□□□□□ -0.17
USP40-206ENST00000443711 RAP1BP61224 184 aa14□□□□□ -0.17
USP40-206ENST00000443711 RAP1AP62834 184 aa14□□□□□ -0.17
USP40-206ENST00000443711 TOP3AQ13472 1001 aaPredicted RBP14□□□□□ -0.17
USP40-206ENST00000443711 CLEC12AQ5QGZ9 265 aa14□□□□□ -0.17
USP40-206ENST00000443711 FAM205BPQ63HN1 556 aa14□□□□□ -0.17
USP40-206ENST00000443711 NIPAL3Q6P499 406 aa14□□□□□ -0.17
USP40-206ENST00000443711 CASP12Q6UXS9 341 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms