RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 GAB4Q2WGN9 574 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 WDR53Q7Z5U6 358 aaPredicted RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 TMEM163Q8TC26 289 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 ROBO4Q8WZ75 1007 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 OR5P2Q8WZ92 322 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 MRGPRX4Q96LA9 322 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 EBPLQ9BY08 206 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 TAS2R16Q9NYV7 291 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 PTGFRNQ9P2B2 879 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 DNAJB11Q9UBS4 358 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 REM1O75628 298 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 PITPNBP48739 271 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SH3BP2P78314 561 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 GBX1Q14549 363 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 CDC73Q6P1J9 531 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 LRRTM1Q86UE6 522 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 MARCH9Q86YJ5 346 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 B3GNT7Q8NFL0 401 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SPPL2AQ8TCT8 520 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 GPBAR1Q8TDU6 330 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SLC35G5Q96KT7 338 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 AMDHD1Q96NU7 426 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 TPT1P8Q9HAU6 139 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 F5P12259 2224 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 TEX13DA0A0J9YY54 714 aaPredicted RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 ZNF726A6NNF4 738 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SULT1A3P0DMM9 295 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SULT1A4P0DMN0 295 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 NFYBP25208 207 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 PTTG1IPP53801 180 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.03□□□□□ -0.96
USP54-205ENST00000424265 C3orf38Q5JPI3 329 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 FIGNL1Q6PIW4 674 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 JAGN1Q8N5M9 183 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 AGBL5Q8NDL9 886 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 OR4K14Q8NGD5 310 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 OR10Q1Q8NGQ4 319 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 MS4A4EQ96PG1 132 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SLC26A1Q9H2B4 701 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 KLHL9Q9P2J3 617 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 DNAJC15Q9Y5T4 150 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 LRRN3E7EW58 273 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 NPIPB9F8W1W9 429 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 ITGB1BP1O14713 200 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SUSD5O60279 629 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SNRPCP09234 159 aaKnown RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 ZNF16P17020 682 aaPredicted RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 TMEM95Q3KNT9 176 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 SLC35D3Q5M8T2 416 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 ZNF548Q8NEK5 533 aaPredicted RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 OR52B6Q8NGF0 335 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 OR14K1Q8NGZ2 314 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 UBE2FQ969M7 185 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 NEIL2Q969S2 332 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 FAM117AQ9C073 453 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 LRRN3Q9H3W5 708 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 PRODH2Q9UF12 536 aa9.03□□□□□ -0.96
USP54-205ENST00000424265 ING1Q9UK53 422 aaPredicted RBP9.03□□□□□ -0.96
USP54-205ENST00000424265 MCRIP1C9JLW8 97 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 GTPBP1O00178 669 aaKnown RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 TOX3O15405 576 aaPredicted RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 DIRAS1O95057 198 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 FOLR2P14207 255 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 FABP4P15090 132 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 NPBWR1P48145 328 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 IDH3GP51553 393 aaPredicted RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 UFM1P61960 85 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 ST3GAL2Q16842 350 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 DLEU7Q6UYE1 221 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 ARL14Q8N4G2 192 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 INO80EQ8NBZ0 244 aaPredicted RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 SMAP2Q8WU79 429 aaPredicted RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 ADAD1Q96M93 576 aaKnown RBP9.02□□□□□ -0.96
USP54-205ENST00000424265 GPR78Q96P69 363 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 CMKLR1Q99788 373 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 TMEM231Q9H6L2 316 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 UTS2RQ9UKP6 389 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 PLEKHM1Q9Y4G2 1056 aa9.02□□□□□ -0.96
USP54-205ENST00000424265 A0A0D9SG52 128 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 TNFRSF11BO00300 401 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 GOSR2O14653 212 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 IGHEP01854 428 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 GLB1P16278 677 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 RBMS1P29558 406 aaKnown RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 SLC6A12P48065 614 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 NCBP2P52298 156 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP54-205ENST00000424265 PRKAG1P54619 331 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 TAS2R38P59533 333 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 PAGE3Q5JUK9 113 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SFRP4Q6FHJ7 346 aaPredicted RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 RPS27LQ71UM5 84 aaKnown RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 ZNF619Q8N2I2 560 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 EID2Q8N6I1 236 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 C19orf47Q8N9M1 422 aaKnown RBP9.02□□□□□ -0.97
USP54-205ENST00000424265 OR56B1Q8NGI3 324 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SLC37A2Q8TED4 501 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 KCNJ15Q99712 375 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 SGPP1Q9BX95 441 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 TMEM9BQ9NQ34 198 aa9.02□□□□□ -0.97
USP54-205ENST00000424265 C2orf42Q9NWW7 574 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms