RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 VRK2Q86Y07 508 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 C20orf196Q8IYI0 205 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 OR52P1PQ8NH57 321 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 LRR1Q96L50 414 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 CCDC115Q96NT0 180 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 NKIRAS2Q9NYR9 191 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 ZNF224Q9NZL3 707 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 SEC14L4Q9UDX3 406 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 BTNL2Q9UIR0 455 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 FZR1Q9UM11 496 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 CORINQ9Y5Q5 1042 aa14.28□□□□□ -0.12
CHCHD3-202ENST00000423635 C17orf100A8MU93 164 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 M0R3G1 203 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 AKAP8O43823 692 aaKnown RBP14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 PRG2P13727 222 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 RPS5P46782 204 aaKnown RBP14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 RAB1AP62820 205 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 C1DQ13901 141 aaKnown RBP14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 DPY19L1Q2PZI1 675 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 GLIPR1L2Q4G1C9 344 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 LIN52Q52LA3 116 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 SPANXN4Q5MJ08 99 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 AVPI1Q5T686 147 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 DOK3Q7L591 496 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 SYT14Q8NB59 555 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 C22orf15Q8WYQ4 148 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 KTI12Q96EK9 354 aaPredicted RBP14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 SLITRK2Q9H156 845 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 AKTIPQ9H8T0 292 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 ZMAT3Q9HA38 289 aaKnown RBP14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 SLC7A8Q9UHI5 535 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 FBXL3Q9UKT7 428 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 CHST2Q9Y4C5 530 aa14.27□□□□□ -0.12
CHCHD3-202ENST00000423635 A0A1W2PPW3 197 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 AIM2O14862 343 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 TRAF3IP2O43734 574 aaPredicted RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 OR2T1O43869 369 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 CDC14BO60729 498 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 GTF2E2P29084 291 aaKnown RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 PTDSS1P48651 473 aaKnown RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 IL13RA1P78552 427 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 TEKQ02763 1124 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 CHI3L2Q15782 390 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 PCGF3Q3KNV8 242 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 RNF220Q5VTB9 566 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 RBMS3Q6XE24 437 aaKnown RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF813Q6ZN06 617 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 GSPT2Q8IYD1 628 aaKnown RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 CLIP4Q8N3C7 705 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 TRIML2Q8N7C3 387 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 SIGLECL1Q8N7X8 197 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 MGARPQ8TDB4 240 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 APOPT1Q96IL0 206 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 HINT3Q9NQE9 182 aaKnown RBP14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 ARMCX1Q9P291 453 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 GPR160Q9UJ42 338 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 WIPI2Q9Y4P8 454 aa14.26□□□□□ -0.13
CHCHD3-202ENST00000423635 IGLV3-9A0A075B6K5 115 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 CCDC154A6NI56 674 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 NUDT17P0C025 328 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 NCF2P19878 526 aaPredicted RBP14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 GIPRP48546 466 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 CCL8P80075 99 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 NKPD1Q17RQ9 610 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 COX20Q5RI15 118 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 ATG16L1Q676U5 607 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 NHLRC1Q6VVB1 395 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 H1FNTQ75WM6 255 aaPredicted RBP14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 NET1Q7Z628 596 aaPredicted RBP14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 TREML1Q86YW5 311 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 EPS8L3Q8TE67 593 aaKnown RBP14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 MED29Q9NX70 200 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 TAAR3PQ9P1P4 343 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 SLC17A7Q9P2U7 560 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 POFUT2Q9Y2G5 429 aa14.25□□□□□ -0.13
CHCHD3-202ENST00000423635 PPIAL4EA0A075B759 164 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 PPIAL4CA0A0B4J2A2 164 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 IGHV1-69-2A0A0G2JMI3 117 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 SMIM23A6NLE4 172 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 PPIAL4DF5H284 164 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 MS4A18H0YCH9 400 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 M0R082 166 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 UBL3O95164 117 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 RAB36O95755 333 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 SERPINA5P05154 406 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 PPIAL4FP0DN26 164 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ZNF250P15622 560 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 S100A3P33764 101 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 RAD52P43351 418 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 CLNS1AP54105 237 aaKnown RBP14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 AQP5P55064 265 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 SELENOVP59797 346 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 MFSD13AQ14CX5 517 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 MS4A18Q3C1V0 323 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 ALKBH6Q3KRA9 238 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 FAM69AQ5T7M9 428 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 RGS7BPQ6MZT1 257 aaPredicted RBP14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 TMEM154Q6P9G4 183 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 C5orf46Q6UWT4 87 aa14.24□□□□□ -0.13
CHCHD3-202ENST00000423635 C6orf89Q6UWU4 347 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms