RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 KCNK17Q96T54 332 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 VRK1Q99986 396 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 CPPED1Q9BRF8 314 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM43Q9BTV4 400 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 REPIN1Q9BWE0 567 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 RSPO3Q9BXY4 272 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 IKZF5Q9H5V7 419 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 SEC61A2Q9H9S3 476 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 B3GAT2Q9NPZ5 323 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.02□□□□□ -0.84e-19■■□□□ 13.9
SQSTM1-203ENST00000422245 IGHV2OR16-5A0A0B4J2B6 119 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 VSTM5A8MXK1 200 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 FMO6PO60774 539 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 BGLAPP02818 100 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 CELA3BP08861 270 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 NPR2P20594 1047 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 CAPZA2P47755 286 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 POU3F1Q03052 451 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 PUDPQ08623 228 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 NPRL3Q12980 569 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 GGTLC2Q14390 218 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 OR1Q1Q15612 314 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 ADRM1Q16186 407 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 CARTPTQ16568 116 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 GLIPR1L2Q4G1C9 344 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 VHLLQ6RSH7 139 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 MDP1Q86V88 176 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 SNX32Q86XE0 403 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 C20orf196Q8IYI0 205 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 ANKS4BQ8N8V4 417 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 C11orf65Q8NCR3 313 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF540Q8NDQ6 660 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 IL17RDQ8NFM7 739 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 TMEM158Q8WZ71 300 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 LRR1Q96L50 414 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 BEX2Q9BXY8 128 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 SHARPINQ9H0F6 387 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 RAB1BQ9H0U4 201 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 MRPL39Q9NYK5 338 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 LEF1Q9UJU2 399 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 KCNS2Q9ULS6 477 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 NOX1Q9Y5S8 564 aa10.02□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF503-AS2A6NEH8 195 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 hCG_2039718K7EN88 272 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 M0R3G1 203 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 MFN2O95140 757 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 HPRP00739 348 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 MT-ATP6P00846 226 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 C8BP07358 591 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 APEHP13798 732 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 CBLP22681 906 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 THBS4P35443 961 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 PCBP3P57721 371 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 HGFACQ04756 655 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 RBBP4Q09028 425 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 PMS2P3Q13401 168 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 SNTB2Q13425 540 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 CYP51A1Q16850 503 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 CARD17Q5XLA6 110 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 FAM166AQ6J272 317 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF613Q6PF04 617 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 DLEU7Q6UYE1 221 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 DHDDSQ86SQ9 333 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 MYPOPQ86VE0 399 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 C10orf53Q8N6V4 93 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF837Q96EG3 531 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 PRR14Q9BWN1 585 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 ULBP2Q9BZM5 246 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 NOX3Q9HBY0 568 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 DYNLRB1Q9NP97 96 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 MALRD1Q5VYJ5 2156 aa10.01□□□□□ -0.81
SQSTM1-203ENST00000422245 IGHV4-61A0A0C4DH41 118 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF726A6NNF4 738 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 MS4A18H0YCH9 400 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 M0R3H8 397 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 ANGPT2O15123 496 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 CHP2O43745 196 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 LMX1BO60663 402 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 TPST2O60704 377 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 SEC14L2O76054 403 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 HLA-HP01893 362 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 VIMP08670 466 aaKnown RBP10□□□□□ -0.81
SQSTM1-203ENST00000422245 HLA-DOBP13765 273 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 IGFBP5P24593 272 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 THBS2P35442 1172 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 CDH12P55289 794 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 DAG1Q14118 895 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 GSG1Q2KHT4 349 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 MS4A18Q3C1V0 323 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 IQCCQ4KMZ1 466 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 RUNDC3AQ59EK9 446 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 TTMPQ5BVD1 217 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 PHYHD1Q5SRE7 291 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF813Q6ZN06 617 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 ZNF627Q7L945 461 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 SPATA21Q7Z572 469 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 PXKQ7Z7A4 578 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 PTOV1Q86YD1 416 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 SLC30A8Q8IWU4 369 aa10□□□□□ -0.81
SQSTM1-203ENST00000422245 SVOPLQ8N434 492 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms