RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LOC105371242A0A075B767 164 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 A0A0G2JPF8 293 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 VSTM5A8MXK1 200 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ZNF99A8MXY4 864 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 HNRNPCL2B2RXH8 293 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 B4DSR2 109 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 HNRNPCL3B7ZW38 293 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 AIM2O14862 343 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 RGS16O15492 202 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 PPIHO43447 177 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 SYNGR3O43761 229 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 CDC14BO60729 498 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 HNRNPCL1O60812 293 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 SLC22A3O75751 556 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ANP32DO95626 131 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ERCC1P07992 297 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 HNRNPCL4P0DMR1 293 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 GAAP10253 952 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 CCL2P13500 99 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 B4GALT1P15291 398 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 H2AFXP16104 143 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 ZNF14P17017 642 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 GTF2E2P29084 291 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 MAGEB1P43366 347 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 GPR6P46095 362 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 GIPRP48546 466 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PTDSS1P48651 473 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 ANXA11P50995 505 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 SH3BGRP55822 239 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 LMO4P61968 165 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ACTG1P63261 375 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 CAMK2DQ13557 499 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 RAB39AQ14964 217 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 MFSD13AQ14CX5 517 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 AVPI1Q5T686 147 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 SLC2A7Q6PXP3 512 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 NHLRC1Q6VVB1 395 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ZNF813Q6ZN06 617 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 H1FNTQ75WM6 255 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 ZNF771Q7L3S4 317 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 MAVSQ7Z434 540 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PEG10Q86TG7 708 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 GLCCI1Q86VQ1 547 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 C20orf196Q8IYI0 205 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 MIER2Q8N344 545 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PAQR4Q8N4S7 273 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 ANKRD42Q8N9B4 389 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PIK3C3Q8NEB9 887 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 RNF217Q8TC41 542 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 GTF3AQ92664 365 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 TMEM186Q96B77 213 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 MOGAT1Q96PD6 335 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ZNF317Q96PQ6 595 aaPredicted RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 TSPAN32Q96QS1 320 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 OR52B2Q96RD2 323 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 ZBTB18Q99592 522 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PARD6BQ9BYG5 372 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PAIP1Q9H074 479 aaKnown RBP6.95□□□□□ -1.3
VIM-202ENST00000421459 RACGAP1Q9H0H5 632 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 OR51B6Q9H340 312 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 CENPHQ9H3R5 247 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 KLHL14Q9P2G3 628 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 RPS6KB2Q9UBS0 482 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 DUSP13Q9UII6 198 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 USP22Q9UPT9 525 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 RCE1Q9Y256 329 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 PCDHB14Q9Y5E9 798 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 TRRAPQ9Y4A5 3859 aa6.95□□□□□ -1.3
VIM-202ENST00000421459 TRAV36DV7A0A075B6V5 113 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 A0A096LPI6 279 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 M0R233 179 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 TPST2O60704 377 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 BGLAPP02818 100 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 MSMBP08118 114 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 ZCCHC18P0CG32 403 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 FAM157BP0CG42 384 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 SAGP10523 405 aaPredicted RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 NQO1P15559 274 aaKnown RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 ADRA2CP18825 462 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 WDR4P57081 412 aaKnown RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 ERVS71-1P61550 626 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 RAB1AP62820 205 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 TXNL4AP83876 142 aaKnown RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 POU3F1Q03052 451 aaPredicted RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 MVKQ03426 396 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 RGNQ15493 299 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 FXNQ16595 210 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 GSG1Q2KHT4 349 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 TRMT5Q32P41 509 aaKnown RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 C6orf10Q5SRN2 563 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 FAM69AQ5T7M9 428 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 GKAP1Q5VSY0 366 aaPredicted RBP6.94□□□□□ -1.3
VIM-202ENST00000421459 WDR88Q6ZMY6 472 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 ZNF584Q8IVC4 421 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 UEVLDQ8IX04 471 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 SKA3Q8IX90 412 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 ANKK1Q8NFD2 765 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 NFKBIDQ8NI38 313 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 MGARPQ8TDB4 240 aa6.94□□□□□ -1.3
VIM-202ENST00000421459 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms