RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PRAMEF27A3QJZ7 478 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SMIM30A4D0T7 59 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 TRABD2BA6NFA1 517 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 CYBAP13498 195 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF44P15621 663 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 TIMP2P16035 220 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 RAB5AP20339 215 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SNRPD2P62316 118 aaKnown RBP5.65□□□□□ -1.5
SCN1A-203ENST00000409050 C11orf91Q3C1V1 193 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 AADACL3Q5VUY0 350 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 PRAMEF9Q5VWM5 478 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 TANGO2Q6ICL3 276 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SLC16A14Q7RTX9 510 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 GPRIN1Q7Z2K8 1008 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF280BQ86YH2 543 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 MFSD6LQ8IWD5 586 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 APCDD1Q8J025 514 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 RPL3LQ92901 407 aaKnown RBP5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SLC35B4Q969S0 331 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 C20orf85Q9H1P6 137 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 LRRC30A6NM36 301 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ST8SIA5O15466 376 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SLCO2B1O94956 709 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 IL5P05113 134 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 FBP1P09467 338 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ATXN1LP0C7T5 689 aaKnown RBP5.65□□□□□ -1.5
SCN1A-203ENST00000409050 NID1P14543 1247 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 PTGER4P35408 488 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ARL16Q0P5N6 197 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 HYAL2Q12891 473 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 OLIG2Q13516 323 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 HTR4Q13639 388 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 OXA1LQ15070 435 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 RNLSQ5VYX0 342 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 H3F3CQ6NXT2 135 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SLCO4C1Q6ZQN7 724 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 GRINAQ7Z429 371 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 ADGRF3Q8IZF5 1079 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM178AQ8NBL3 297 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 C3orf58Q8NDZ4 430 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 MVB12AQ96EY5 273 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SLC35A4Q96G79 324 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SGPP1Q9BX95 441 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 FN3KRPQ9HA64 309 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 SSUH2Q9Y2M2 353 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 PIAS3Q9Y6X2 628 aa5.65□□□□□ -1.5
SCN1A-203ENST00000409050 PRSS38A1L453 326 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF354AO60765 605 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 MT-ND4P03905 459 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 HEXAP06865 529 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 GSTP1P09211 210 aaKnown RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ELAVL4P26378 380 aaKnown RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 CD70P32970 193 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 VIPR2P41587 438 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 NOVA1P51513 510 aaKnown RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 SEMG2Q02383 582 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ACVR1Q04771 509 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 RAB35Q15286 201 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 TOMM34Q15785 309 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 MEP1BQ16820 701 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 GTDC1Q4AE62 458 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 MEX3BQ6ZN04 569 aaKnown RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 LYSMD2Q8IV50 215 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 BBS1Q8NFJ9 593 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 OR5AR1Q8NGP9 310 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 TMIGD2Q96BF3 282 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 CXorf58Q96LI9 332 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF331Q9NQX6 463 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 RPH3AQ9Y2J0 694 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ACTL7AQ9Y615 435 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 LRP6O75581 1613 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 A0A087WZY1 265 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 F5H5K5 113 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 CPEP16870 476 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 EPHA1P21709 976 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 XCR1P46094 333 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 DAPP51397 102 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 CD81P60033 236 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 FOXK2Q01167 660 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF85Q03923 595 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 POU4F3Q15319 338 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 LYRM7Q5U5X0 104 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 SLC48A1Q6P1K1 146 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 IL34Q6ZMJ4 242 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 PPP1R3BQ86XI6 285 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 DTWD2Q8NBA8 298 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 MDGA1Q8NFP4 955 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 FAM3CQ92520 227 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 FAM3DQ96BQ1 224 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ARV1Q9H2C2 271 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 BCAS3Q9H6U6 928 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 MRPL15Q9P015 296 aaKnown RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 LHX3Q9UBR4 397 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF629Q9UEG4 869 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-203ENST00000409050 SLCO3A1Q9UIG8 710 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 PPT2Q9UMR5 302 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 POMT1Q9Y6A1 747 aa5.65□□□□□ -1.51
SCN1A-203ENST00000409050 IGLV3-10A0A075B6K4 115 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 PMS2P1A4D2B8 440 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 WTIPA6NIX2 430 aaPredicted RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms