RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TP53I3Q53FA7 332 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 DMKNQ6E0U4 476 aaPredicted RBP14.1□□□□□ -0.15
CCDC40-202ENST00000374876 MZT2BQ6NZ67 158 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 MS4A15Q8N5U1 240 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 RFLNBQ8N5W9 214 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 OR2T27Q8NH04 317 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 GHSRQ92847 366 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PGLYRP3Q96LB9 341 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 B3GAT2Q9NPZ5 323 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 KLHL1Q9NR64 748 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 EXTL2Q9UBQ6 330 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PTRH2Q9Y3E5 179 aaKnown RBP14.1□□□□□ -0.15
CCDC40-202ENST00000374876 SCDO00767 359 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 TFP02787 698 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PNMTP11086 282 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 UBL4AP11441 157 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 TALDO1P37837 337 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 NR4A2P43354 598 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 MAP2K3P46734 347 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 GBX2P52951 348 aaPredicted RBP14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PRPS1P60891 318 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 GGTLC2Q14390 218 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 QPRTQ15274 297 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 GXYLT1Q4G148 440 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 ACSM3Q53FZ2 586 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 WBP2NLQ6ICG8 309 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 SFXN4Q6P4A7 337 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 SLC35F2Q8IXU6 374 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 GHDCQ8N2G8 530 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 STT3BQ8TCJ2 826 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PHOSPHO1Q8TCT1 267 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PTPMT1Q8WUK0 201 aaPredicted RBP14.1□□□□□ -0.15
CCDC40-202ENST00000374876 FRMD6Q96NE9 622 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 NMNAT3Q96T66 252 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 RNF121Q9H920 327 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 LANCL2Q9NS86 450 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 CLCA3PQ9Y6N3 262 aa14.1□□□□□ -0.15
CCDC40-202ENST00000374876 DSPP15924 2871 aaKnown RBP14.1□□□□□ -0.15
CCDC40-202ENST00000374876 PTPRQQ9UMZ3 2332 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 A0A1W2PRG6 482 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 A8MUA0 341 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 SERPINA3P01011 423 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 ADH7P40394 386 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 KIR2DL3P43628 341 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 PPICP45877 212 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 SLC37A1P57057 533 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 TMPRSS3P57727 454 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 ERVK-25P63136 954 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 CD226Q15762 336 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 ATAD3CQ5T2N8 411 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 PXKQ7Z7A4 578 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 LRRC28Q86X40 367 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-202ENST00000374876 SYS1Q8N2H4 156 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 C10orf53Q8N6V4 93 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 ZSCAN1Q8NBB4 408 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 FAM71CQ8NEG0 241 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 SNX33Q8WV41 574 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 TMEM43Q9BTV4 400 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 OR8D2Q9GZM6 311 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 NEK6Q9HC98 313 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 NRIP3Q9NQ35 241 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 ST6GALNAC2Q9UJ37 374 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 RASD1Q9Y272 281 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 MMACHCQ9Y4U1 282 aa14.09□□□□□ -0.15
CCDC40-202ENST00000374876 HTR3EA5X5Y0 456 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 ARPC3O15145 178 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 IDH3BO43837 385 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 SC5DO75845 299 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 IL33O95760 270 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 DIO1P49895 249 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 OR10A3P58181 314 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 IL10RAQ13651 578 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 COL28A1Q2UY09 1125 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 PLET1Q6UQ28 207 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 ZNF321PQ8N8H1 164 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 SAMD12Q8N8I0 201 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 SCAIQ8N9R8 606 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 NPEPL1Q8NDH3 523 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 OR14A16Q8NHC5 309 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 OIT3Q8WWZ8 545 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 UBL7Q96S82 380 aaPredicted RBP14.08□□□□□ -0.15
CCDC40-202ENST00000374876 SPSB2Q99619 263 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 TTYH2Q9BSA4 534 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 SLC26A1Q9H2B4 701 aa14.08□□□□□ -0.15
CCDC40-202ENST00000374876 RBFOX1Q9NWB1 397 aaKnown RBP14.08□□□□□ -0.15
CCDC40-202ENST00000374876 EPG5Q9HCE0 2579 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 IGKV1D-42A0A075B6H8 117 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 HMX3A6NHT5 357 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 VSTM2BA6NLU5 285 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 BLOC1S5-TXNDC5H3BN57 136 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 K7ENP7 123 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 MAGEB4O15481 346 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 SERPINI2O75830 405 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 UTS2O95399 124 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 UMODP07911 640 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 TRAPPC2P0DI81 140 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 TRAPPC2BP0DI82 140 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 PSKH1P11801 424 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 SPI1P17947 270 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 RPS4XP62701 263 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms