RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ANKRD9Q96BM1 317 aaPredicted RBP14.95□□□□□ -0.02
SDC4-201ENST00000372733 MRM2Q9UI43 246 aaKnown RBP14.95□□□□□ -0.02
SDC4-201ENST00000372733 OR6C74A6NCV1 312 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 HRKO00198 91 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 OR10H2O60403 315 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 UPK3AO75631 287 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ACTR1BP42025 376 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 CDKN2AP42771 156 aaKnown RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ADPRHP54922 357 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 PRMT2P55345 433 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 SEC13P55735 322 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ACTR1AP61163 376 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 GK2Q14410 553 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ZNF273Q14593 569 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 KCNAB1Q14722 419 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 KIR2DS3Q14952 304 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 RBMS2Q15434 407 aaKnown RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ODF4Q2M2E3 257 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 GSG1LQ6UXU4 331 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 FAM220AQ7Z4H9 259 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 CA13Q8N1Q1 262 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 MUC20Q8N307 709 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 OR52H1Q8NGJ2 320 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 OR5AK2Q8NH90 309 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 NSMAFQ92636 917 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 DPYSL5Q9BPU6 564 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ZFYVE21Q9BQ24 234 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 AIFM2Q9BRQ8 373 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 KCNK15Q9H427 330 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 EXOSC3Q9NQT5 275 aaKnown RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ZC4H2Q9NQZ6 224 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 FRRS1LQ9P0K9 344 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 FBXL2Q9UKC9 423 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ETV7Q9Y603 341 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 TMEM272A0A1B0GTI8 110 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 KRBOX1C9JBD0 128 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 F5H5P2 479 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 H0Y8X5 98 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ANXA2P07355 339 aaKnown RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ICAM2P13598 275 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 LSSP48449 732 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 MAT1AQ00266 395 aaKnown RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ZMYND11Q15326 602 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 B3GNTL1Q67FW5 361 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ENPP7Q6UWV6 458 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 OR2AK2Q8NG84 335 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 SP7Q8TDD2 431 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 FBXW5Q969U6 566 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 TSACCQ96A04 125 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 RERGQ96A58 199 aaPredicted RBP14.94□□□□□ -0.02
SDC4-201ENST00000372733 ACTR10Q9NZ32 417 aa14.94□□□□□ -0.02
SDC4-201ENST00000372733 ARPC3O15145 178 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 FGF2P09038 288 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 MNDAP41218 407 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 GPR143P51810 404 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 EFNB2P52799 333 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 ALKBH1Q13686 389 aaKnown RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 C1orf53Q5VUE5 145 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TANGO2Q6ICL3 276 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 ESX1Q8N693 406 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 BVESQ8NE79 360 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 OR1S1Q8NH92 325 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 PMM1Q92871 262 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 PRDM9Q9NQV7 894 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 GPR160Q9UJ42 338 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3DA0A087WVF3 549 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3IA0A087WXS9 549 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TVP23AA6NH52 213 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 HMSDA8MTL9 139 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3LB9A6J9 549 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 BLOC1S5-TXNDC5H3BN57 136 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 H7C1C5 153 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 H7C417 338 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TNFSF14O43557 240 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 RDH16O75452 317 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 RBBP9O75884 186 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 SPDEFO95238 335 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 LDOC1O95751 146 aaPredicted RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 IGF2P01344 180 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3HP0C7X1 549 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 AQP2P41181 271 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 RPS27P42677 84 aaKnown RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 LCN6P62502 163 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 RIPPLY1Q0D2K3 151 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3CQ6IPX1 549 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TFAP2EQ6VUC0 442 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 ZNF550Q7Z398 422 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 TBC1D3Q8IZP1 549 aaPredicted RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 OR51A4Q8NGJ6 313 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 SCARF2Q96GP6 870 aaPredicted RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.93□□□□□ -0.02
SDC4-201ENST00000372733 MED11Q9P086 117 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 MTFP1Q9UDX5 166 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 ZNF337Q9Y3M9 751 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 RWDD3Q9Y3V2 267 aa14.93□□□□□ -0.02
SDC4-201ENST00000372733 A0A087WUJ7 227 aa14.92□□□□□ -0.02
SDC4-201ENST00000372733 SIGLEC5O15389 551 aa14.92□□□□□ -0.02
SDC4-201ENST00000372733 KDM4BO94953 1096 aa14.92□□□□□ -0.02
SDC4-201ENST00000372733 PGDP52209 483 aa14.92□□□□□ -0.02
SDC4-201ENST00000372733 SIGLEC14Q08ET2 396 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms