RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ACHEP22303 614 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 FAM53BQ14153 422 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 PAQR7Q86WK9 346 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 GLB1L2Q8IW92 636 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 NPEPL1Q8NDH3 523 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 OR51S1Q8NGJ8 323 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 MYADMQ96S97 322 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 SLC38A3Q99624 504 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 CACNA1CQ13936 2221 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 SULT1B1O43704 296 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 BRINP1O60477 761 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 SLC35G6P0C7Q6 338 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 EFNB2P52799 333 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 FBXO42Q6P3S6 717 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 KIRREL2Q6UWL6 708 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 EID2Q8N6I1 236 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 OR5M9Q8NGP3 310 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 OR10AC1Q8NH08 325 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 TRAV8-7A0A075B6U6 113 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 TMEM72A0PK05 275 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 EPOPA6NHQ4 379 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 HMSDA8MTL9 139 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 CTSVO60911 334 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RBBP9O75884 186 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RAB40ALP0C0E4 278 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 TLX1P31314 330 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RPS27P42677 84 aaKnown RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 LTBQ06643 244 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 GGTLC2Q14390 218 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RBMS2Q15434 407 aaKnown RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 C4orf46Q504U0 113 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RD3Q7Z3Z2 195 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 HSD17B13Q7Z5P4 300 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 CDRT4Q8N9R6 151 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 RAB40AQ8WXH6 277 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 UTP23Q9BRU9 249 aaKnown RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 PBX4Q9BYU1 374 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 FBXO9Q9UK97 447 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-202ENST00000341753 ENTPD2Q9Y5L3 495 aa20.42■□□□□ 0.86
TRIM28-202ENST00000341753 B3GALT2O43825 422 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 GLSO94925 669 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ACAA2P42765 397 aaKnown RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 SRSF5Q13243 272 aaKnown RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 SGCGQ13326 291 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 TMEM31Q5JXX7 168 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 OTPQ5XKR4 325 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 TSSK4Q6SA08 328 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 USP53Q70EK8 1073 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ZSCAN2Q7Z7L9 614 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 DUSP19Q8WTR2 217 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 GAL3ST1Q99999 423 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ULBP3Q9BZM4 244 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 PHPT1Q9NRX4 125 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 RABL2AQ9UBK7 228 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ZNF230Q9UIE0 474 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 MRTO4Q9UKD2 239 aaKnown RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 DNASE2O00115 360 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 CTNSO60931 367 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 FBXO45P0C2W1 286 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 IGFALSP35858 605 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 UBXN2BQ14CS0 331 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ZNF416Q9BWM5 594 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 SAV1Q9H4B6 383 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-202ENST00000341753 DUSP22Q9NRW4 184 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 GLS2Q9UI32 602 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 KLF15Q9UIH9 416 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 DENND4AQ7Z401 1863 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 ALPK2Q86TB3 2170 aa20.41■□□□□ 0.86
TRIM28-202ENST00000341753 MST1P26927 711 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 CALCRP30988 508 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 LGALS3BPQ08380 585 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 ELP2Q6IA86 826 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 DGAT2L6Q6ZPD8 337 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 NAXDQ8IW45 347 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 SLC35F3Q8IY50 421 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 OR51A4Q8NGJ6 313 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 LRRC46Q96FV0 321 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 GDE1Q9NZC3 331 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 RASGRP1O95267 797 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 HPP00738 406 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 APODP05090 189 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 GTF2F2P13984 249 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 ILF3Q12906 894 aaKnown RBP eCLIP20.4■□□□□ 0.86
TRIM28-202ENST00000341753 NNATQ16517 81 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 NPAS1Q99742 590 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 PRDM9Q9NQV7 894 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 DNAJB12Q9NXW2 375 aaKnown RBP20.4■□□□□ 0.86
TRIM28-202ENST00000341753 H0Y8X5 98 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 ANXA2P07355 339 aaKnown RBP20.4■□□□□ 0.86
TRIM28-202ENST00000341753 CALCBP10092 127 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 GAS6Q14393 721 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 LEG1Q6P5S2 330 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 NARS2Q96I59 477 aaKnown RBP20.4■□□□□ 0.86
TRIM28-202ENST00000341753 ZNF426Q9BUY5 554 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 SLITRK2Q9H156 845 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 FGF22Q9HCT0 170 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 C14orf105Q9NVL8 296 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 FRRS1LQ9P0K9 344 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 SLC22A7Q9Y694 548 aa20.4■□□□□ 0.86
TRIM28-202ENST00000341753 ATG2AQ2TAZ0 1938 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms