RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ZNF583Q96ND8 569 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 KATNB1Q9BVA0 655 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CHST6Q9GZX3 395 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR6C2Q9NZP2 312 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GPR55Q9Y2T6 319 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NBASA2RRP1 2371 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 M0R2N6 131 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SLC16A6O15403 523 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ITM2AO43736 263 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZFAND5O76080 213 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SNAI1O95863 264 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CFDP00746 253 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CD44P16070 742 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CR2P20023 1033 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PCGF2P35227 344 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPS13P62277 151 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 HOXA4Q00056 320 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 IGFBP7Q16270 282 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CT83Q5H943 113 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 DHRS13Q6UX07 377 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GDPD3Q7L5L3 318 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 IGDCC3Q8IVU1 814 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CDRT4Q8N9R6 151 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PIP5K1AQ99755 562 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 IKZF4Q9H2S9 585 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ALG9Q9H6U8 611 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPF2Q9H7B2 306 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 POLDIP2Q9Y2S7 368 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NAV3Q8IVL0 2385 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NCF1BA6NI72 391 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NCF1CA8MVU1 366 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF878C9JN71 531 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ANKRD63C9JTQ0 380 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PAGE1O75459 146 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 S1PR4O95977 384 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ADRA2CP18825 462 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TEAD1P28347 426 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SSTR1P30872 391 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ATP1B3P54709 279 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CLDN8P56748 225 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 BPIFB3P59826 476 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPS25P62851 125 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MED25Q71SY5 747 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PIGZQ86VD9 579 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF561Q8N587 486 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ARRDC1Q8N5I2 433 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LMNTD1Q8N9Z9 388 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR5B17Q8NGF7 314 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR13C8Q8NGS7 320 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR13J1Q8NGT2 312 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CNTNAP3Q9BZ76 1288 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 FAM234AQ9H0X4 552 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 UBQLN4Q9NRR5 601 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 STEAP1Q9UHE8 339 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF225Q9UK10 706 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TRAPPC4Q9Y296 219 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PLCE1Q9P212 2302 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TMEM218A2RU14 115 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 F8W036 122 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GPR42O15529 346 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 FZD7O75084 574 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SLC43A1O75387 559 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CNOT4O95628 575 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CRYZL1O95825 349 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LINC00032P0C843 101 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SMIM6P0DI80 62 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GNRHRP30968 328 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CCKARP32238 428 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GJA5P36382 358 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ARL2P36404 184 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPS19P39019 145 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CSKP41240 450 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CAMLGP49069 296 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 WDR4P57081 412 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CDK5Q00535 292 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TLE1Q04724 770 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 FAM151BQ6UXP7 276 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 IL34Q6ZMJ4 242 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SULF2Q8IWU5 870 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR2T35Q8NGX2 323 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 APH1AQ96BI3 265 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 C10orf35Q96D05 121 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NEIL1Q96FI4 390 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 C3orf30Q96M34 536 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NMUR2Q9GZQ4 415 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SPHK1Q9NYA1 384 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF346Q9UL40 294 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 USP3Q9Y6I4 520 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PLXNA4Q9HCM2 1894 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LOC105369274A0A096LPK9 316 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 A0A1W2PPV4 95 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 NDUFS4O43181 175 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 NDUFB2O95178 105 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 QDPRP09417 244 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CRHBPP24387 322 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 EDNRBP24530 442 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 PIGAP37287 484 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 DDOSTP39656 456 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CSN1S1P47710 185 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CCR6P51684 374 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms