RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PELI1Q96FA3 418 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PLEKHF1Q96S99 279 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 GAL3ST1Q99999 423 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 KLHDC3Q9BQ90 382 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 ZNF670Q9BS34 389 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 SPATA16Q9BXB7 569 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 OR51J1Q9H342 316 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PRO3102Q9H379 93 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 YY1AP1Q9H869 796 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 SGK2Q9HBY8 427 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 SLC17A5Q9NRA2 495 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 UFSP2Q9NUQ7 469 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 CDH10Q9Y6N8 788 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 TTC41PQ6P2S7 1318 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 NAIPQ13075 1403 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 CDC42BPGQ6DT37 1551 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 TIAM2Q8IVF5 1701 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 COL18A1P39060 1754 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PAPPA2Q9BXP8 1791 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 NHSQ6T4R5 1651 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 CLTCL1P53675 1640 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 A0A0J9YXY3 114 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SERTM2A0A1B0GWG4 89 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 TRDCB7Z8K6 153 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 TRIM49D1C9J1S8 452 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 F5H6K3 240 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 H0YIV9 168 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 CXCL13O43927 109 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 OR10H3O60404 316 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 IGHG4P01861 327 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 LGALS2P05162 132 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 HPNP05981 417 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 FGF4P08620 206 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ANXA8P13928 327 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 NCK1P16333 377 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 MGMTP16455 207 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 AZU1P20160 251 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 MX1P20591 662 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 MMP11P24347 488 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 HMGB2P26583 209 aaKnown RBP2.29□□□□□ -2.04
HMGB1-201ENST00000326004 MAGEA8P43361 318 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 CCT3P49368 545 aaKnown RBP2.29□□□□□ -2.04
HMGB1-201ENST00000326004 RIPK4P57078 832 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SEC61GP60059 68 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 TLE4Q04727 773 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 KLRC3Q07444 240 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PSG7Q13046 419 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 HERPUD1Q15011 391 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SSX2Q16385 188 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SLC25A52Q3SY17 297 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 TP53I3Q53FA7 332 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PRAMEF5Q5TYX0 476 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ANXA8L1Q5VT79 327 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PRAMEF6Q5VXH4 476 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 CST9Q5W186 159 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 KCNIP4Q6PIL6 250 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ACOT7LQ6ZUV0 252 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 RUFY3Q7L099 469 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 NLRP9Q7RTR0 991 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 EGFL6Q8IUX8 553 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC50Q8IVM0 306 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 RNF175Q8N4F7 328 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ATP6V0D2Q8N8Y2 350 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 LINC01555Q8NAE3 123 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 OR4D9Q8NGE8 314 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 OR52I1Q8NGK6 324 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 OR4D5Q8NGN0 318 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SLC2A14Q8TDB8 520 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 HTR3CQ8WXA8 447 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ELSPBP1Q96BH3 223 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 TMEM101Q96IK0 257 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SLC35E1Q96K37 410 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PGLYRP4Q96LB8 373 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ARHGDIGQ99819 225 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SLC39A3Q9BRY0 314 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ROPN1BQ9BZX4 212 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SELENOIQ9C0D9 397 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 FAM192AQ9GZU8 254 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 NARFLQ9H6Q4 476 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 ZFP14Q9HCL3 533 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SPATA7Q9P0W8 599 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 RPS6KB2Q9UBS0 482 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SEC14L3Q9UDX4 400 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 SUN2Q9UH99 717 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 COPS3Q9UNS2 423 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PIGLQ9Y2B2 252 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 PIEZO1Q92508 2521 aa2.29□□□□□ -2.04
HMGB1-201ENST00000326004 BTAF1O14981 1849 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 WI2-2373I1.2A0A1W2PRP0 233 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 NCF1BA6NI72 391 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 VSTM2BA6NLU5 285 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 SNTNA6NMZ2 147 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 NCF1CA8MVU1 366 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ABCD4O14678 606 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 NBR2O15453 112 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 TIMM8AO60220 97 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CTAG2O75638 210 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 SCGNO76038 276 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 PABPC4LP0CB38 370 aaKnown RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 HSMCR30P0CW71 290 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms