RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ATF6BQ99941 703 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 CRLF2Q9HC73 371 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NPAP1Q9NZP6 1156 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MCTS1Q9ULC4 181 aaKnown RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 PLIN4Q96Q06 1357 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF142P52746 1687 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 B4DXG7 233 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NDUFB2O95178 105 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 EFNA3P52797 238 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RAP1AP62834 184 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 GNB1P62873 340 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 GPLD1P80108 840 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 OR1Q1Q15612 314 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF74Q16587 644 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TMEM104Q8NE00 496 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 YIPF5Q969M3 257 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 LPAR4Q99677 370 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 GNG12Q9UBI6 72 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 E7ESA3 106 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NFKBIEO00221 500 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 YKT6O15498 198 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ADAMTS4O75173 837 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 HRH2P25021 359 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 EMP2P54851 167 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZP2Q05996 745 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RTP2Q5QGT7 225 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 AMIGO3Q86WK7 504 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 OR6F1Q8NGZ6 308 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 SLC7A13Q8TCU3 470 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TMED6Q8WW62 240 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NKX6-2Q9C056 277 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 LY86O95711 162 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 F13BP05160 661 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MELKQ14680 651 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 SIX1Q15475 284 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 C9orf152Q5JTZ5 239 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 NKAIN2Q5VXU1 208 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RBMS3Q6XE24 437 aaKnown RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 SMIM15Q7Z3B0 74 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 HSD11B1LQ7Z5J1 315 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 LILRA2Q8N149 483 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MTMR14Q8NCE2 650 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 OR51A4Q8NGJ6 313 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 OR51A2Q8NGJ7 313 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ZFAND1Q8TCF1 268 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 TMEM239Q8WW34 195 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MSI2Q96DH6 328 aaKnown RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 GINS3Q9BRX5 216 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 SRRQ9GZT4 340 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 C20orf85Q9H1P6 137 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MTHFD2P13995 350 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 IL2RGP31785 369 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 S100A11P31949 105 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RAB35Q15286 201 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 PRRC1Q96M27 445 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 LYSMD1Q96S90 227 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MTHFD2LQ9H903 347 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 PPP6CO00743 305 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 CYB5BO43169 146 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 PHF1O43189 567 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 NQO2P16083 231 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 PSMB1P20618 241 aaKnown RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 ZNF90Q03938 601 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ADPRMQ3LIE5 342 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RPL7L1Q6DKI1 246 aaKnown RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 HAVCR2Q8TDQ0 301 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ZFYVE21Q9BQ24 234 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 HIPK2Q9H2X6 1198 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ANKRD10Q9NXR5 420 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 CAMTA1Q9Y6Y1 1673 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 TET1Q8NFU7 2136 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 POU3F1Q03052 451 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 ACKR1Q16570 336 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 OVCH1Q7RTY7 1134 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ZNF587BE7ETH6 402 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 FABP1P07148 127 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 DRD2P14416 443 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 CEBPBP17676 345 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 NTSR1P30989 418 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 TRHRP34981 398 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 KRTDAPP60985 99 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 NHSL2Q5HYW2 709 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RHBDD1Q8TEB9 315 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RLN3Q8WXF3 142 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 KATNB1Q9BVA0 655 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 CSAG2Q9Y5P2 127 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 TIMM8AO60220 97 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 SOX15O60248 233 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 MT-ND4LP03901 98 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 LPLP06858 475 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 SMIM18P0DKX4 95 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 GABRA5P31644 462 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 RAB11AP62491 216 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 JAG1P78504 1218 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 HES1Q14469 280 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 TMEM176BQ3YBM2 270 aaPredicted RBP7.34□□□□□ -1.23
CIITA-201ENST00000324288 H3F3CQ6NXT2 135 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 PDZD3Q86UT5 571 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 NEIL2Q969S2 332 aa7.34□□□□□ -1.23
CIITA-201ENST00000324288 ZNF891A8MT65 544 aaPredicted RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms