RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SIGLEC7Q9Y286 467 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 ADAM18Q9Y3Q7 739 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 HIVEP3Q5T1R4 2406 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 FLNCQ14315 2725 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 DOCK7Q96N67 2140 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 MYO18BQ8IUG5 2567 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 EIF1BO60739 113 aaKnown RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 PTP4A3O75365 173 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 FPR3P25089 353 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 RPL4P36578 427 aaKnown RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 CASP6P55212 293 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 TSPAN31Q12999 210 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 MELKQ14680 651 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF691Q5VV52 312 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 FAHD1Q6P587 224 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 CCDC71Q8IV32 467 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 MCEMP1Q8IX19 187 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 FANK1Q8TC84 345 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 ITFG2Q969R8 447 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 TMIGD2Q96BF3 282 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 PSD2Q9BQI7 771 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 PAQR5Q9NXK6 330 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 MGAT4BQ9UQ53 548 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 TMEM5Q9Y2B1 443 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 MEMO1Q9Y316 297 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 H3BN98 237 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 CYTIPO60759 359 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 IGHV3-9P01782 118 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 EPHA2P29317 976 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 ERVK-25P63136 954 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 C1DQ13901 141 aaKnown RBP16.16■□□□□ 0.18
HMGA1-201ENST00000311487 SLC17A1Q14916 467 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 ALG10Q5BKT4 473 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 TMEM236Q5W0B7 351 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 ATCAYQ86WG3 371 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 IQCF1Q8N6M8 205 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 UCK2Q9BZX2 261 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 RNF122Q9H9V4 155 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF556Q9HAH1 456 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 B3GALT5Q9Y2C3 310 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 CORINQ9Y5Q5 1042 aa16.16■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF716A6NP11 495 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 IFNGR1P15260 489 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 GSTT1P30711 240 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 UQCRC1P31930 480 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 LGALS3BPQ08380 585 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CD47Q08722 323 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 IL18R1Q13478 541 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CARD17Q5XLA6 110 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 NUFIP2Q7Z417 695 aaKnown RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 OR9K2Q8NGE7 335 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 OR8D4Q8NGM9 314 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 WNT2BQ93097 391 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 OR52D1Q9H346 318 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 RIBC2Q9H4K1 309 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 KRT84Q9NSB2 600 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 REV1Q9UBZ9 1251 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CEPT1Q9Y6K0 416 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 A0A0G2JNJ9 132 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CD8B2A6NJW9 211 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 TP53P04637 393 aaPredicted RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 STSP08842 583 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF43P17038 809 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CLDN17P56750 224 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CTXN1P60606 82 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 ISL1P61371 349 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 RPS4XP62701 263 aaKnown RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 MFSD13AQ14CX5 517 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 RBM48Q5RL73 367 aaKnown RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 ABLIM2Q6H8Q1 611 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 LAIR2Q6ISS4 152 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 VWA1Q6PCB0 445 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 SMARCD3Q6STE5 483 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 LINC00471Q8N535 108 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 CLDN22Q8N7P3 220 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 LIPHQ8WWY8 451 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 HDAC2Q92769 488 aaKnown RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 DGCR6LQ9BY27 220 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 PAPOLBQ9NRJ5 636 aaKnown RBP16.15■□□□□ 0.18
HMGA1-201ENST00000311487 Q9UFV3 132 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 ARHGAP21Q5T5U3 1957 aa16.15■□□□□ 0.18
HMGA1-201ENST00000311487 H3BSA7 217 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 ADAP00813 363 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 IL2RAP01589 272 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 ANXA8P13928 327 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 C6orf141Q5SZD1 244 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 SLC35F1Q5T1Q4 408 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 ZNF620Q6ZNG0 422 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 UEVLDQ8IX04 471 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 ZIC4Q8N9L1 334 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 SCAIQ8N9R8 606 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 OR6S1Q8NH40 331 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 FBLIM1Q8WUP2 373 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 KATNB1Q9BVA0 655 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 IFT27Q9BW83 186 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 HIF3AQ9Y2N7 669 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 ZNF175Q9Y473 711 aa16.14■□□□□ 0.17
HMGA1-201ENST00000311487 INTS1Q8N201 2190 aaKnown RBP16.14■□□□□ 0.17
HMGA1-201ENST00000311487 MBD3L4A6NDZ8 208 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-201ENST00000311487 MBD3L3A6NE82 208 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms