RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HRH4Q9H3N8 390 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 MTHFD2LQ9H903 347 aaPredicted RBP13.14□□□□□ -0.31
SDC1-201ENST00000254351 COMMD9Q9P000 198 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 A0A0B4J2A0 478 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 TMEM218A2RU14 115 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 OR14I1A6ND48 311 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 CTDSPLO15194 276 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 AMY2AP04746 511 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 GP1BAP07359 652 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 NTHL1P78549 312 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 REEP5Q00765 189 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 TEAD2Q15562 447 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SLC48A1Q6P1K1 146 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SPAG16Q8N0X2 631 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SVBPQ8N300 66 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 OR4S1Q8NGB4 309 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PPP1R14AQ96A00 147 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 HAVCR1Q96D42 359 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SDF2Q99470 211 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ATG5Q9H1Y0 275 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SLC25A32Q9H2D1 315 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PRDM7Q9NQW5 492 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SPHK1Q9NYA1 384 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 EMC3Q9P0I2 261 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 NDRG3Q9UGV2 375 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SHPKQ9UHJ6 478 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ZNF223Q9UK11 482 aaPredicted RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 ANAPC1Q9H1A4 1944 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 COL4A3Q01955 1670 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 RAB19A4D1S5 217 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PQBP1O60828 265 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 ACAA1P09110 424 aaPredicted RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 OR4E1P0C645 316 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 CPMP14384 443 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 VAMP1P23763 118 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PTGFRP43088 359 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PPIAP62937 165 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 SNTB1Q13884 538 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 TPGS2Q68CL5 300 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 RPL22L1Q6P5R6 122 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 ABHD17CQ6PCB6 329 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 BAIAP2L2Q6UXY1 529 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 COX18Q8N8Q8 333 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PLPP7Q8NBV4 271 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 OR5K2Q8NHB8 316 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PPP1R1CQ8WVI7 109 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 TMED6Q8WW62 240 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 IRF7Q92985 503 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 TMEM106AQ96A25 262 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 GAS2L1Q99501 681 aaPredicted RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 BARX1Q9HBU1 254 aaPredicted RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 APOBEC3BQ9UH17 382 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 A0A1B0GW55 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 GXYLT2A0PJZ3 443 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 CPED1A4D0V7 1026 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ALOX12BO75342 701 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PAPLNO95428 1278 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L2P0CJ85 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L3P0CJ86 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L4P0CJ87 422 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L5P0CJ88 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L6P0CJ89 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4L7P0CJ90 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SELPP16109 830 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 SLC2A5P22732 501 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 FAUP35544 74 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 CENPAP49450 140 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ZNF528Q3MIS6 628 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ARHGAP40Q5TG30 622 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 TMEM200AQ86VY9 491 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DND1Q8IYX4 353 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 NUBPLQ8TB37 319 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 FGF13Q92913 245 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 C10orf90Q96M02 699 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 PARP12Q9H0J9 701 aaKnown RBP13.13□□□□□ -0.31
SDC1-201ENST00000254351 APMAPQ9HDC9 416 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 DUX4Q9UBX2 424 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 ZNF281Q9Y2X9 895 aa13.13□□□□□ -0.31
SDC1-201ENST00000254351 MPTX1A8MV57 137 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 IFNGP01579 166 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 HLA-AP01891 365 aaKnown RBP13.12□□□□□ -0.31
SDC1-201ENST00000254351 ACTC1P68032 377 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 ACTA1P68133 377 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 SMAD2Q15796 467 aaKnown RBP13.12□□□□□ -0.31
SDC1-201ENST00000254351 SLC39A5Q6ZMH5 540 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 ANKRD33Q7Z3H0 272 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 OR5T2Q8NGG2 359 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 SLC22A8Q8TCC7 542 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 LMLNQ96KR4 655 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 RSRP1Q9BUV0 290 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 MKL2Q9ULH7 1088 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 DENND4AQ7Z401 1863 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 TSPAN11A1L157 253 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 RFPL4AA6NLU0 287 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 RFPL4AL1F8VTS6 287 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 OGG1O15527 345 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 MGMTP16455 207 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 ZNF658BQ4V348 819 aaPredicted RBP13.12□□□□□ -0.31
SDC1-201ENST00000254351 ALG10BQ5I7T1 473 aa13.12□□□□□ -0.31
SDC1-201ENST00000254351 LY6G6FQ5SQ64 297 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms