RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NPIPB9F8W1W9 429 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 CDK2AP1O14519 115 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 ITPKBP27987 946 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 DIO1P49895 249 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 TPMTP51580 245 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 CD276Q5ZPR3 534 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 Q6ZS52 159 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 FAM122BQ7Z309 247 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 LPAR4Q99677 370 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 NPDC1Q9NQX5 325 aaPredicted RBP9.71□□□□□ -0.85
USP28-201ENST00000003302 FBXO4Q9UKT5 387 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 SPEF1Q9Y4P9 236 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 KHNYNO15037 678 aaKnown RBP9.71□□□□□ -0.85
USP28-201ENST00000003302 PEX14O75381 377 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 CSRP1P21291 193 aaKnown RBP9.71□□□□□ -0.85
USP28-201ENST00000003302 CFL1P23528 166 aaKnown RBP9.71□□□□□ -0.85
USP28-201ENST00000003302 GFERP55789 205 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 FAM74A1Q5RGS3 127 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 BCORP1Q8N888 145 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 OR51A2Q8NGJ7 313 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 NMNAT2Q9BZQ4 307 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 NOX3Q9HBY0 568 aa9.71□□□□□ -0.85
USP28-201ENST00000003302 NCOA6Q14686 2063 aaPredicted RBP9.71□□□□□ -0.86
USP28-201ENST00000003302 ARPC5O15511 151 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 TNFSF14O43557 240 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 ABHD16AO95870 558 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 ADH1BP00325 375 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 CSTAP01040 98 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 HTR4Q13639 388 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 NFATC4Q14934 902 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 GPALPP1Q8IXQ4 340 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 RNF113BQ8IZP6 322 aaKnown RBP9.71□□□□□ -0.86
USP28-201ENST00000003302 GJD3Q8N144 294 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 LSM14AQ8ND56 463 aaKnown RBP9.71□□□□□ -0.86
USP28-201ENST00000003302 MAP3K3Q99759 626 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 C1QTNF7Q9BXJ2 289 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 EMC7Q9NPA0 242 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 B3GNT2Q9NY97 397 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 ADAM30Q9UKF2 790 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 A0A1B0GVI7 797 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 NDUFB2O95178 105 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 LPLP06858 475 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 TLX1P31314 330 aaPredicted RBP9.71□□□□□ -0.86
USP28-201ENST00000003302 RSPO4Q2I0M5 234 aaPredicted RBP9.71□□□□□ -0.86
USP28-201ENST00000003302 EIPR1Q53HC9 387 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 ZNF613Q6PF04 617 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 CDK20Q8IZL9 346 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 C10orf53Q8N6V4 93 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 C1orf216Q8TAB5 229 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 THEM6Q8WUY1 208 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 HGDQ93099 445 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 TMEM106AQ96A25 262 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 DHRS9Q9BPW9 319 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 RAB11FIP5Q9BXF6 653 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 TEX12Q9BXU0 123 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 REG4Q9BYZ8 158 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 HAO2Q9NYQ3 351 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 STMN3Q9NZ72 180 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 PHF11Q9UIL8 331 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 ING4Q9UNL4 249 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 CAMK2AQ9UQM7 478 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 HRH3Q9Y5N1 445 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 NPFFR2Q9Y5X5 522 aa9.71□□□□□ -0.86
USP28-201ENST00000003302 LINC00862A6NCI5 91 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 C5orf67F2Z3F1 127 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TRIM77I1YAP6 450 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TRIM3O75382 744 aaPredicted RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 ACSM4P0C7M7 580 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 PSMB1P20618 241 aaKnown RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 TSFMP43897 325 aaKnown RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 PON3Q15166 354 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 MOGAT2Q3SYC2 334 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 UNQ9370/PRO34162Q6UXP9 181 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 SHISA6Q6ZSJ9 500 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 LRRTM1Q86UE6 522 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TPRA1Q86W33 373 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 PM20D2Q8IYS1 436 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 GPR119Q8TDV5 335 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TSLPQ969D9 159 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 PTDSS2Q9BVG9 487 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 SATB2Q9UPW6 733 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 EML6Q6ZMW3 1958 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 LOC100509620A0A075B734 347 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 A0A087WUJ7 227 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TRAV1-2A0A0B4J238 106 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 CHURC1-FNTBB4DL54 471 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 HLA-DOBP13765 273 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 GALP22466 123 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 NTSR1P30989 418 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TAS2R20P59543 309 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 BEX5Q5H9J7 111 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 TMEM69Q5SWH9 247 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 NKAIN2Q5VXU1 208 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 RERGQ96A58 199 aaPredicted RBP9.7□□□□□ -0.86
USP28-201ENST00000003302 OR2M2Q96R28 347 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 GDE1Q9NZC3 331 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 AUP1Q9Y679 476 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 PLSCR5A0PG75 271 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 WIPF3A6NGB9 483 aa9.7□□□□□ -0.86
USP28-201ENST00000003302 B4DGG1 531 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms