RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MEPEQ9NQ76 525 aaPredicted RBP18.27■□□□□ 0.52
CLN3-240ENST00000631023 CADP27708 2225 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 ARPC2O15144 300 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 THBDP07204 575 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 ADORA3P0DMS8 318 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 SELENOPP49908 381 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 UGT2B15P54855 530 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 OR7E24Q6IFN5 339 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 PXKQ7Z7A4 578 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 MUCL1Q96DR8 90 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 PYURFQ96I23 114 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 NGBQ9NPG2 151 aa18.26■□□□□ 0.51
CLN3-240ENST00000631023 ENO4A6NNW6 628 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 J3KTA2 159 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 HRGP04196 525 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 ITGA2P17301 1181 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 WFDC8Q8IUA0 241 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 PFN4Q8NHR9 129 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 SGTBQ96EQ0 304 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 TAS2R1Q9NYW7 299 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 RHCGQ9UBD6 479 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 PRPF19Q9UMS4 504 aaKnown RBP18.25■□□□□ 0.51
CLN3-240ENST00000631023 HRNRQ86YZ3 2850 aaPredicted RBP18.25■□□□□ 0.51
CLN3-240ENST00000631023 FFAR1O14842 300 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 SLC43A1O75387 559 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 HPRP00739 348 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 ASAH2BP0C7U1 165 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 RHCEP18577 417 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 FUT1P19526 365 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 MPGP29372 298 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 POU3F1Q03052 451 aaPredicted RBP18.25■□□□□ 0.51
CLN3-240ENST00000631023 ZP4Q12836 540 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 TAB1Q15750 504 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 STK11Q15831 433 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 BEX5Q5H9J7 111 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 TIMM23BQ5SRD1 257 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 CDC20BQ86Y33 519 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 ANKK1Q8NFD2 765 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 MCUR1Q96AQ8 359 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 LINC00470Q9BZP3 86 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 MUC13Q9H3R2 512 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 ANKRD19PQ9H560 264 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 ACTR3BQ9P1U1 418 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 EDARQ9UNE0 448 aa18.25■□□□□ 0.51
CLN3-240ENST00000631023 DEFB108AA8MXU0 73 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 ZNF587BE7ETH6 402 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 C11orf98E9PRG8 122 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 PDLIM1O00151 329 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 TRAF3IP2O43734 574 aaPredicted RBP18.24■□□□□ 0.51
CLN3-240ENST00000631023 RAD51DO75771 328 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 OR7A10O76100 309 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 UBOX5O94941 541 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 HLA-DOBP13765 273 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 ALKBH2Q6NS38 261 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 RRM2BQ7LG56 351 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 SLC46A3Q7Z3Q1 461 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 NANOGNBQ7Z5D8 188 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 RNF113BQ8IZP6 322 aaKnown RBP18.24■□□□□ 0.51
CLN3-240ENST00000631023 LRRC17Q8N6Y2 441 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 PIK3IP1Q96FE7 263 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 NMNAT1Q9HAN9 279 aaPredicted RBP18.24■□□□□ 0.51
CLN3-240ENST00000631023 NDUFAF4Q9P032 175 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 V9GYQ6 96 aa18.24■□□□□ 0.51
CLN3-240ENST00000631023 OR5H1A6NKK0 313 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 ZNF726A6NNF4 738 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 RNF13O43567 381 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 ZNF432O94892 652 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 ITGA5P08648 1049 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 TRIM25Q14258 630 aaKnown RBP18.23■□□□□ 0.51
CLN3-240ENST00000631023 ZNF730Q6ZMV8 503 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 FAM86B1Q8N7N1 296 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 PIK3C3Q8NEB9 887 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 C1orf162Q8NEQ5 155 aaPredicted RBP18.23■□□□□ 0.51
CLN3-240ENST00000631023 LIPHQ8WWY8 451 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 ACOT11Q8WXI4 607 aaPredicted RBP18.23■□□□□ 0.51
CLN3-240ENST00000631023 C7orf34Q96L11 122 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 MUS81Q96NY9 551 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 MAN2C1Q9NTJ4 1040 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 C20orf141Q9NUB4 165 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 TAS2R5Q9NYW4 299 aa18.23■□□□□ 0.51
CLN3-240ENST00000631023 BLOC1S5-TXNDC5H3BN57 136 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 hCG_2039718K7EN88 272 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 SERPINI2O75830 405 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 PRSS23O95084 383 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 H1F0P07305 194 aaKnown RBP18.22■□□□□ 0.51
CLN3-240ENST00000631023 NR1H2P55055 460 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 PPA1Q15181 289 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 GABRA6Q16445 453 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 MTX3Q5HYI7 312 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 C9orf135Q5VTT2 229 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 HMBOX1Q6NT76 420 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 CDK20Q8IZL9 346 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 GPR137CQ8N3F9 429 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 BPIFA2Q96DR5 249 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 OR2M2Q96R28 347 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 DSCAMO60469 2012 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 PDZD2O15018 2839 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 CCDC168Q8NDH2 2452 aa18.22■□□□□ 0.51
CLN3-240ENST00000631023 SLC35F4A4IF30 521 aa18.21■□□□□ 0.51
CLN3-240ENST00000631023 GYG2O15488 501 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms