RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 OR5J2Q8NH18 312 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 S100ZQ8WXG8 99 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 OPALINQ96PE5 141 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 TACSTD2P09758 323 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 SDC2P34741 201 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 GNALP38405 381 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 SKP2Q13309 424 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 INSL4Q14641 139 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 STPG1Q5TH74 334 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 ZNF57Q68EA5 555 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-213ENST00000620219 EVA1AQ9H8M9 152 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 ERVK13-1Q9NX77 482 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 LRFN1Q9P244 771 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 IGHEP01854 428 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 ADRA2AP08913 450 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 OR8G3PP0DMU2 310 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 SLC6A9P48067 706 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 FBLIM1Q8WUP2 373 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 UTP23Q9BRU9 249 aaKnown RBP14.28□□□□□ -0.12
CPSF1-213ENST00000620219 STUB1Q9UNE7 303 aa14.28□□□□□ -0.12
CPSF1-213ENST00000620219 APC2O95996 2303 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 IGKV3D-11A0A0A0MRZ8 115 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 GALK2Q01415 458 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 ACKR1Q16570 336 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 LOXL4Q96JB6 756 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 ARL5BQ96KC2 179 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 DHRS1Q96LJ7 313 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 WDR77Q9BQA1 342 aaPredicted RBP14.27□□□□□ -0.12
CPSF1-213ENST00000620219 SLC25A19Q9HC21 320 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 MMP25Q9NPA2 562 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 FBXO8Q9NRD0 319 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 MED17Q9NVC6 651 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 DIMT1Q9UNQ2 313 aaKnown RBP14.27□□□□□ -0.12
CPSF1-213ENST00000620219 STMND1H3BQB6 276 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 NCR1O76036 304 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 IFNGR1P15260 489 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 TGFBR2P37173 567 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 ACTC1P68032 377 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 ACTA1P68133 377 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 ZNF74Q16587 644 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 COMMD4Q9H0A8 199 aa14.27□□□□□ -0.12
CPSF1-213ENST00000620219 IGHV3-15A0A0B4J1V0 119 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 BMP4P12644 408 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 GALNSP34059 522 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 PRKXP51817 358 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 NIPAL3Q6P499 406 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 HS3ST3B1Q9Y662 390 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 LY6G6EA0A0G2JKS1 128 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 BIDP55957 195 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 RBM24Q9BX46 236 aaKnown RBP14.27□□□□□ -0.13
CPSF1-213ENST00000620219 CDCA4Q9BXL8 241 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 MROQ9BYG7 248 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 TIGARQ9NQ88 270 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 WIF1Q9Y5W5 379 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 U3KQA8 63 aa14.27□□□□□ -0.13
CPSF1-213ENST00000620219 NGFRP08138 427 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 PUDPQ08623 228 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 APCDD1LQ8NCL9 501 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TTYH2Q9BSA4 534 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TSPAN10Q9H1Z9 355 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-213ENST00000620219 ISG20L2Q9H9L3 353 aaKnown RBP14.26□□□□□ -0.13
CPSF1-213ENST00000620219 BABAM2Q9NXR7 383 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 IMPA2O14732 288 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TFECO14948 347 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-213ENST00000620219 GALR2O43603 387 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-213ENST00000620219 GPANK1O95872 356 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TUBA1BP68363 451 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 IL18Q14116 193 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 MFSD13AQ14CX5 517 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TRIQKQ629K1 86 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TUBA1AQ71U36 451 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 GRAMD2AQ8IUY3 354 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 PHC2Q8IXK0 858 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 NANOGP1Q8N7R0 232 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 AP3S1Q92572 193 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 B4GALT7Q9UBV7 327 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 SBK2P0C263 348 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 ZNF806P0C7X5 589 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 SSX1Q16384 188 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 ZNF322Q6U7Q0 402 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-213ENST00000620219 C19orf18Q8NEA5 215 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TTC9Q92623 222 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 MCCC2Q9HCC0 563 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 TCF7L1Q9HCS4 588 aa14.26□□□□□ -0.13
CPSF1-213ENST00000620219 MRPS14O60783 128 aaKnown RBP14.25□□□□□ -0.13
CPSF1-213ENST00000620219 WDPCPO95876 746 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 GP1BAP07359 652 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 NUBPLQ8TB37 319 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 DOK1Q99704 481 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 A0A1B0GVC2 190 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 A6NIN4 97 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 TP53P04637 393 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-213ENST00000620219 SCG5P05408 212 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 MZT2AQ6P582 158 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 PLCZ1Q86YW0 608 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 LINC00346Q8IVM7 164 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 LSMEM1Q8N8F7 131 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 DYNC2LI1Q8TCX1 351 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 ZPBPQ9BS86 351 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 SACM1LQ9NTJ5 587 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms