RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CTNSO60931 367 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 EPHA5P54756 1037 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 CAMK2DQ13557 499 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 PRAMEF20Q5VT98 475 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SAXO2Q658L1 398 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 DPY19L2P2Q6ZN68 376 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 FAM57BQ71RH2 274 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SLC25A46Q96AG3 418 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 RADILQ96JH8 1075 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SULT4A1Q9BR01 284 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 WDR76Q9H967 626 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 DUSP22Q9NRW4 184 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-212ENST00000616140 MAST2Q6P0Q8 1798 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TRBV5-4A0A0C4DH59 114 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 POM121BA6NF01 834 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 EFCAB7A8K855 629 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TMX2-CTNND1H3BSU7 103 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 HOXC11O43248 304 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-212ENST00000616140 EXOSC6Q5RKV6 272 aaKnown RBP12.94□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF836Q6ZNA1 936 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 ESX1Q8N693 406 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 PFN4Q8NHR9 129 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SDF2Q99470 211 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 OR51B6Q9H340 312 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 LIN7BQ9HAP6 207 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 EMC9Q9Y3B6 208 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 NFYAP23511 347 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-212ENST00000616140 FOLR3P41439 243 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 MC2RQ01718 297 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 MLC1Q15049 377 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SF3B4Q15427 424 aaKnown RBP eCLIP12.94□□□□□ -0.346e-7■■■■□ 22
CPSF1-212ENST00000616140 ZNF77Q15935 545 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 GDPD3Q7L5L3 318 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 LINC00346Q8IVM7 164 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 IL1F10Q8WWZ1 152 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 HRH4Q9H3N8 390 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 NIPAL2Q9H841 368 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 NTNG1Q9Y2I2 539 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 A6NCN8 305 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 H0Y8X5 98 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 OR7C1O76099 320 aaPredicted RBP12.94□□□□□ -0.34
CPSF1-212ENST00000616140 UTS2O95399 124 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 PRKACBP22694 351 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 BTN1A1Q13410 526 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 PRSS45Q7RTY3 260 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TRAPPC6BQ86SZ2 158 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 OR13H1Q8NG92 308 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 PFDN5Q99471 154 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 SGPP1Q9BX95 441 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TMEM59Q9BXS4 323 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 GABARAPL3Q9BY60 117 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 FBXO8Q9NRD0 319 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TMPRSS11EQ9UL52 423 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 TRIM64A6NGJ6 449 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 PIPP12273 146 aaPredicted RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 RAC2P15153 192 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 TRHRP34981 398 aaPredicted RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 LIM2P55344 173 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 MELKQ14680 651 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ANKRD36CQ5JPF3 1778 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 OPN5Q6U736 354 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 OR14A16Q8NHC5 309 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 RPS10P5Q9NQ39 176 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 BIN3Q9NQY0 253 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF44P15621 663 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 CD1EP15812 388 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 HOXA9P31269 272 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 AQP6Q13520 282 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ALKBH1Q13686 389 aaKnown RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 OR1S1Q8NH92 325 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ASB16Q96NS5 453 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 NPAP1Q9NZP6 1156 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 LRFN1Q9P244 771 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ASXL3Q9C0F0 2248 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 ZC3H12DA2A288 527 aaKnown RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 A6NL46 340 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 TNFSF12O43508 249 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 LCMT2O60294 686 aaKnown RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 CTHP32929 405 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 SLC14A1Q13336 389 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 SMAP2Q8WU79 429 aaPredicted RBP12.93□□□□□ -0.34
CPSF1-212ENST00000616140 SLC46A1Q96NT5 459 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 NTN4Q9HB63 628 aa12.93□□□□□ -0.34
CPSF1-212ENST00000616140 TMED7-TICAM2A0A0A6YYA0 188 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SELENOFO60613 162 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 EEF1A2Q05639 463 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 HTR4Q13639 388 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 GLYATL3Q5SZD4 288 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 LIPNQ5VXI9 398 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 STEAP1BQ6NZ63 245 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PAPD4Q6PIY7 484 aaKnown RBP12.92□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF620Q6ZNG0 422 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 LIX1LQ8IVB5 337 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 KDM8Q8N371 416 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 OR14K1Q8NGZ2 314 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 PATE1Q8WXA2 126 aa12.92□□□□□ -0.34
CPSF1-212ENST00000616140 SLC35A4Q96G79 324 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms