RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 LIN54Q6MZP7 749 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 SEZ6L2Q6UXD5 910 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 GLB1L2Q8IW92 636 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 LINC00518Q8N0U6 118 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 C10orf53Q8N6V4 93 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 FLRT3Q9NZU0 649 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 LHX6Q9UPM6 363 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 TVP23AA6NH52 213 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PRICKLE3O43900 615 aaPredicted RBP16.79■□□□□ 0.28
UPF1-210ENST00000600689 NDUFB6O95139 128 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 EFNB2P52799 333 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PPP2CBP62714 309 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PPP2CAP67775 309 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 EIPR1Q53HC9 387 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 OVCH1Q7RTY7 1134 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PRSS41Q7RTY9 318 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 OR4K14Q8NGD5 310 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 SUSD6Q92537 303 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 RGP1Q92546 391 aaPredicted RBP16.79■□□□□ 0.28
UPF1-210ENST00000600689 ZNF75AQ96N20 296 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 ZCCHC4Q9H5U6 513 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PRSS16Q9NQE7 514 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 MUC22E2RYF6 1773 aaPredicted RBP16.79■□□□□ 0.28
UPF1-210ENST00000600689 TMEM72A0PK05 275 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 DNASE2O00115 360 aaPredicted RBP16.79■□□□□ 0.28
UPF1-210ENST00000600689 OGG1O15527 345 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 DOK2O60496 412 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 RBBP9O75884 186 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 SLC6A6P31641 620 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 ZNF619Q8N2I2 560 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 OR2AK2Q8NG84 335 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 PTDSS2Q9BVG9 487 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 FBXO4Q9UKT5 387 aa16.79■□□□□ 0.28
UPF1-210ENST00000600689 TRAV18A0A075B6X5 111 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 FAM25EA8MYX2 175 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 ANXA2P07355 339 aaKnown RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 EMDP50402 254 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 MAT1AQ00266 395 aaKnown RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 DPTQ07507 201 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 ZIC1Q15915 447 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 B3GNTL1Q67FW5 361 aaPredicted RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 RPL22L1Q6P5R6 122 aaKnown RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 TSSK4Q6SA08 328 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 CDH26Q8IXH8 852 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 SPICQ8N5J4 248 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 OR51D1Q8NGF3 324 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 OR5T3Q8NGG3 340 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 IGFLR1Q9H665 355 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 SRA1Q9HD15 236 aaKnown RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 BLOC1S5-TXNDC5H3BN57 136 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 B3GALNT1O75752 331 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 NID1P14543 1247 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 PEBP1P30086 187 aaKnown RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 PRAMEF8Q5VWM4 474 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 PRAMEF7Q5VXH5 474 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 TMEM185AQ8NFB2 350 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 OR4N2Q8NGD1 307 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 PHOSPHO2Q8TCD6 241 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 SERGEFQ9UGK8 458 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 FBXL3Q9UKT7 428 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 ACOT7O00154 380 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 TRIOO75962 3097 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 TPPPO94811 219 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 GPANK1O95872 356 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 ADRA2CP18825 462 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 LUMP51884 338 aaPredicted RBP16.78■□□□□ 0.28
UPF1-210ENST00000600689 ARHGAP11BQ3KRB8 267 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 BAIAP2L2Q6UXY1 529 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 PXT1Q8NFP0 134 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 BPIFCQ8NFQ6 507 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 OR51A4Q8NGJ6 313 aa16.78■□□□□ 0.28
UPF1-210ENST00000600689 TBC1D3KA0A087X1G2 549 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 OR6C68A6NDL8 312 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 TBC1D3FA6NER0 549 aaPredicted RBP16.77■□□□□ 0.28
UPF1-210ENST00000600689 OR2T7P0C7T2 308 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 CD53P19397 219 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 HSD17B2P37059 387 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 PGDP52209 483 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 LTBQ06643 244 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 DUSP8Q13202 625 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 C9orf50Q5SZB4 431 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 TBC1D3GQ6DHY5 549 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 STAC2Q6ZMT1 411 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 GATSQ8NAP1 163 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 TTLQ8NG68 377 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 OR2T27Q8NH04 317 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 OR10G6Q8NH81 332 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 LMF1Q96S06 567 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 ZNF471Q9BX82 626 aaPredicted RBP16.77■□□□□ 0.28
UPF1-210ENST00000600689 PLA2G2FQ9BZM2 168 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 DPP7Q9UHL4 492 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 CDV3Q9UKY7 258 aaKnown RBP16.77■□□□□ 0.28
UPF1-210ENST00000600689 PLCL2Q9UPR0 1127 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 SPEGQ15772 3267 aa16.77■□□□□ 0.28
UPF1-210ENST00000600689 TRAV8-7A0A075B6U6 113 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 TMEM272A0A1B0GTI8 110 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 NAP1L6A6NFF2 107 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 M0QYG6 137 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 GPR31O00270 319 aa16.77■□□□□ 0.27
UPF1-210ENST00000600689 CTDSPLO15194 276 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms