RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 RDH5Q92781 318 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 GCDHQ92947 438 aaPredicted RBP5.24□□□□□ -1.57
VRK3-220ENST00000600259 ZMYND19Q96E35 227 aaPredicted RBP5.24□□□□□ -1.57
VRK3-220ENST00000600259 KTI12Q96EK9 354 aaPredicted RBP5.24□□□□□ -1.57
VRK3-220ENST00000600259 OXGR1Q96P68 337 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 LRRC37BQ96QE4 947 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 OR2M2Q96R28 347 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 TMPRSS13Q9BYE2 586 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 MS4A5Q9H3V2 200 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 CRLF2Q9HC73 371 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 ZNF275Q9NSD4 429 aaPredicted RBP5.24□□□□□ -1.57
VRK3-220ENST00000600259 SLC6A13Q9NSD5 602 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 MYEF2Q9P2K5 600 aaKnown RBP5.24□□□□□ -1.57
VRK3-220ENST00000600259 REV1Q9UBZ9 1251 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 LGALS13Q9UHV8 139 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 PCDHB10Q9UN67 800 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 RCE1Q9Y256 329 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 CMAHPQ9Y471 501 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 NOTCH1P46531 2555 aa5.24□□□□□ -1.57
VRK3-220ENST00000600259 CMYA5Q8N3K9 4069 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 IGKV1D-42A0A075B6H8 117 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 TLDC2A0PJX2 215 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF99A8MXY4 864 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 TMPRSS2O15393 492 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 SLC43A1O75387 559 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 RGS9O75916 674 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 HPRP00739 348 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 HLA-HP01893 362 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 TFP02787 698 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 GSNP06396 782 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ERCC1P07992 297 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 ALDOCP09972 364 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 NR2F1P10589 423 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 HLA-DOBP13765 273 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF43P17038 809 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 EPHA1P21709 976 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 S100A3P33764 101 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 CHI3L1P36222 383 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 ALDH3B1P43353 468 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 GPR6P46095 362 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 UFM1P61960 85 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 TXNL4AP83876 142 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 HOXC5Q00444 222 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 SNTB2Q13425 540 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 MAD2L1BPQ15013 274 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 SWT1Q5T5J6 900 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 RNF220Q5VTB9 566 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 PRAMEF8Q5VWM4 474 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 PRAMEF7Q5VXH5 474 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 OGFOD2Q6N063 350 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 C6orf89Q6UWU4 347 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF621Q6ZSS3 439 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 SERPINA11Q86U17 422 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 PEX5LQ8IYB4 626 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 C20orf196Q8IYI0 205 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 CADM2Q8N3J6 435 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF781Q8N8C0 355 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 VPS37AQ8NEZ2 397 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 FGFBP3Q8TAT2 258 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 SLC38A5Q8WUX1 472 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 UBLCP1Q8WVY7 318 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 DVL3Q92997 716 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 TAAR8Q969N4 342 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 RNF166Q96A37 237 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 KCTD12Q96CX2 325 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 SLC41A3Q96GZ6 507 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 LRR1Q96L50 414 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 PPP1R36Q96LQ0 422 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 SORT1Q99523 831 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF747Q9BV97 191 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 RBM4Q9BWF3 364 aaKnown RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 TAPBPLQ9BX59 468 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 ZNF696Q9H7X3 374 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 LPAR2Q9HBW0 351 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 DYNLRB1Q9NP97 96 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 OPN4Q9UHM6 478 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 HAO1Q9UJM8 370 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 USP22Q9UPT9 525 aa5.23□□□□□ -1.57
VRK3-220ENST00000600259 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.23□□□□□ -1.57
VRK3-220ENST00000600259 LOC105371242A0A075B767 164 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 A0A096LPI6 279 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 TRAV20A0A0B4J274 112 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 E9PBE3 544 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 TRIM77I1YAP6 450 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 M0R082 166 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 M0R233 179 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 PLPP2O43688 288 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 ZNF500O60304 480 aaPredicted RBP5.22□□□□□ -1.57
VRK3-220ENST00000600259 SEC14L2O76054 403 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 AHSA1O95433 338 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 SAGP10523 405 aaPredicted RBP5.22□□□□□ -1.57
VRK3-220ENST00000600259 ETFAP13804 333 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 LBPP18428 481 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 MAGEB1P43366 347 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 RPS5P46782 204 aaKnown RBP5.22□□□□□ -1.57
VRK3-220ENST00000600259 LIMS1P48059 325 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 CLNS1AP54105 237 aaKnown RBP5.22□□□□□ -1.57
VRK3-220ENST00000600259 AQP5P55064 265 aa5.22□□□□□ -1.57
VRK3-220ENST00000600259 ABCE1P61221 599 aaKnown RBP5.22□□□□□ -1.57
VRK3-220ENST00000600259 ACTG1P63261 375 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms