RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TMCO6Q96DC7 493 aa13.1□□□□□ -0.31
VRK3-217ENST00000599538 MED11Q9P086 117 aa13.1□□□□□ -0.31
VRK3-217ENST00000599538 MALT1Q9UDY8 824 aa13.1□□□□□ -0.31
VRK3-217ENST00000599538 SHISA8B8ZZ34 492 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 YKT6O15498 198 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SLC25A12O75746 678 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 DLGAP3O95886 979 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 HIST1H2ABP04908 130 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 FGF5P12034 268 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 POLR2HP52434 150 aaKnown RBP13.09□□□□□ -0.31
VRK3-217ENST00000599538 SLC26A5P58743 744 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SLC35D3Q5M8T2 416 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 TMEM205Q6UW68 189 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 ARSKQ6UWY0 536 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SPATC1Q76KD6 591 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 HIST3H2AQ7L7L0 130 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SYT9Q86SS6 491 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 HIST1H2ACQ93077 130 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 RNF166Q96A37 237 aaPredicted RBP13.09□□□□□ -0.31
VRK3-217ENST00000599538 PDCD1LG2Q9BQ51 273 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 CCDC32Q9BV29 185 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SYT4Q9H2B2 425 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 SP140LQ9H930 580 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 LINC00854A0A1B0GVQ3 168 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 FABP12A6NFH5 140 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 OGG1O15527 345 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 ARHGEF9O43307 516 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 CELA2AP08217 269 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 PSKH1P11801 424 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 AHCYP23526 432 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 CDC20Q12834 499 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 IL10RAQ13651 578 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 CDK5R1Q15078 307 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 INPP5JQ15735 1006 aaPredicted RBP13.09□□□□□ -0.31
VRK3-217ENST00000599538 CARTPTQ16568 116 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 ACSM3Q53FZ2 586 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 AGAP7PQ5VUJ5 663 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 NUP54Q7Z3B4 507 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 GRINAQ7Z429 371 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 KDM8Q8N371 416 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 FOXN4Q96NZ1 517 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 KCNN2Q9H2S1 579 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 VDAC3Q9Y277 283 aa13.09□□□□□ -0.31
VRK3-217ENST00000599538 OR2J2O76002 312 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 CER1O95813 267 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 IL7P13232 177 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 F8A1P23610 371 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 APEX1P27695 318 aaKnown RBP13.08□□□□□ -0.32
VRK3-217ENST00000599538 MTNR1BP49286 362 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 GDI2P50395 445 aaKnown RBP13.08□□□□□ -0.32
VRK3-217ENST00000599538 SLC25A1P53007 311 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 TAS2R43P59537 309 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 RPS11P62280 158 aaKnown RBP eCLIP13.08□□□□□ -0.32
VRK3-217ENST00000599538 SIRPAP78324 504 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 P2RY14Q15391 338 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 FAM69AQ5T7M9 428 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 C1orf140Q5VVS0 124 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 SLC23A3Q6PIS1 610 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 LYPD8Q6UX82 237 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 IL20RBQ6UXL0 311 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 PXKQ7Z7A4 578 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 PM20D2Q8IYS1 436 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 SYS1Q8N2H4 156 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 HSD17B8Q92506 261 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 AP3S1Q92572 193 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 ARL5BQ96KC2 179 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 SLC26A1Q9H2B4 701 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 SLC6A5Q9Y345 797 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 RALGAPA1Q6GYQ0 2036 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 EML6Q6ZMW3 1958 aa13.08□□□□□ -0.32
VRK3-217ENST00000599538 A0A1W2PQ09 198 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 A8MVM7 634 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 PRKCAP17252 672 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 MAGEB1P43366 347 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 NANOS3P60323 173 aaKnown RBP13.07□□□□□ -0.32
VRK3-217ENST00000599538 ACTA2P62736 377 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 ACTG2P63267 376 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 ZFP36L1Q07352 338 aaKnown RBP13.07□□□□□ -0.32
VRK3-217ENST00000599538 EFR3AQ14156 821 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 TAB1Q15750 504 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 ZNF684Q5T5D7 378 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 IDNKQ5T6J7 187 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 SLC6A19Q695T7 634 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 CNIH2Q6PI25 160 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 CCBE1Q6UXH8 406 aaPredicted RBP13.07□□□□□ -0.32
VRK3-217ENST00000599538 TIGD4Q8IY51 512 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 OR10G3Q8NGC4 313 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 THAP4Q8WY91 577 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 ORAI1Q96D31 301 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 SMIM19Q96E16 107 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 WDR76Q9H967 626 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 RXFP3Q9NSD7 469 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 MYOTQ9UBF9 498 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 ING1Q9UK53 422 aaPredicted RBP13.07□□□□□ -0.32
VRK3-217ENST00000599538 PCDHGB7Q9Y5F8 929 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 A0A0G2JK05 382 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 TRBV2A0A0J9YWF9 115 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 AKR7A3O95154 331 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 PTTG1O95997 202 aa13.07□□□□□ -0.32
VRK3-217ENST00000599538 CSF3P09919 207 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms