RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CLDN15P56746 228 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 CLDN18P56856 261 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 C1DQ13901 141 aaKnown RBP13.84□□□□□ -0.19
UPF1-206ENST00000598471 NADK2Q4G0N4 442 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 SLC35F1Q5T1Q4 408 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 MEDAGQ5VYS4 303 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 FAM205BPQ63HN1 556 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 TMEM225Q6GV28 225 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 PCSK4Q6UW60 755 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 HDDC2Q7Z4H3 204 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 PXKQ7Z7A4 578 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 JAZF1Q86VZ6 243 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 SIAH3Q8IW03 269 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 UEVLDQ8IX04 471 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 ZNF786Q8N393 782 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 TEX19Q8NA77 164 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 LSM14AQ8ND56 463 aaKnown RBP13.84□□□□□ -0.19
UPF1-206ENST00000598471 FBLIM1Q8WUP2 373 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 SARAFQ96BY9 339 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 OXGR1Q96P68 337 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 IL4I1Q96RQ9 567 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 YTHDF1Q9BYJ9 559 aaKnown RBP13.84□□□□□ -0.19
UPF1-206ENST00000598471 TSPAN10Q9H1Z9 355 aaPredicted RBP13.84□□□□□ -0.19
UPF1-206ENST00000598471 TXNIPQ9H3M7 391 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 ZNF226Q9NYT6 803 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 BLOC1S6Q9UL45 172 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 NPIPA1Q9UND3 350 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 NOX1Q9Y5S8 564 aa13.84□□□□□ -0.19
UPF1-206ENST00000598471 LOC102725191A0A1B0GVB3 256 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 SNTNA6NMZ2 147 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 MS4A18H0YCH9 400 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 M0R129 80 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 XKRYO14609 159 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 TLX2O43763 284 aaPredicted RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 PRKYO43930 277 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 TNFAIP8O95379 198 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 TXNDC12O95881 172 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 IGHMP01871 453 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 CPN1P15169 458 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 SUCLG1P53597 346 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 MLLT10P55197 1068 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 RPL27P61353 136 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 CSNK2BP67870 215 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 HSF1Q00613 529 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 SRYQ05066 204 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 CDK5R2Q13319 367 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 KRR1Q13601 381 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 MS4A18Q3C1V0 323 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 RBM48Q5RL73 367 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 C6orf141Q5SZD1 244 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 UGT2A3Q6UWM9 527 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 PM20D2Q8IYS1 436 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 CNIH3Q8TBE1 160 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 HDAC2Q92769 488 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 SRXN1Q9BYN0 137 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 SCN3BQ9NY72 215 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 LUZP4Q9P127 313 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 SPRR3Q9UBC9 169 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 MCTS1Q9ULC4 181 aaKnown RBP13.83□□□□□ -0.2
UPF1-206ENST00000598471 CAMK2AQ9UQM7 478 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 MYRFQ9Y2G1 1151 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 ADAM18Q9Y3Q7 739 aa13.83□□□□□ -0.2
UPF1-206ENST00000598471 CFAP47Q6ZTR5 3102 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 TEX13CA0A0J9YWL9 993 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 SH3D21A4FU49 640 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 A6NIZ1 184 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 PRR23D1E9PI22 279 aaPredicted RBP13.82□□□□□ -0.2
UPF1-206ENST00000598471 H0YC42 278 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 PLGP00747 810 aaPredicted RBP13.82□□□□□ -0.2
UPF1-206ENST00000598471 PRR23D2P0DMB1 279 aaPredicted RBP13.82□□□□□ -0.2
UPF1-206ENST00000598471 ZNF43P17038 809 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 ACVR2AP27037 513 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 P2RY4P51582 365 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 CXCR4P61073 352 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 RAP1BP61224 184 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 RAP1AP62834 184 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 H3F3AP84243 136 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 POU3F1Q03052 451 aaPredicted RBP13.82□□□□□ -0.2
UPF1-206ENST00000598471 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.82□□□□□ -0.2
UPF1-206ENST00000598471 POU4F3Q15319 338 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 ACKR1Q16570 336 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 OCLNQ16625 522 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 TMEM201Q5SNT2 666 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 SLC25A30Q5SVS4 291 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 SLC35D2Q76EJ3 337 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 CXXC5Q7LFL8 322 aaKnown RBP13.82□□□□□ -0.2
UPF1-206ENST00000598471 FAM122BQ7Z309 247 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 ADCK1Q86TW2 530 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 GPAT4Q86UL3 456 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 GID4Q8IVV7 300 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 FAM26EQ8N5C1 309 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 ARIH2OSQ8N7S6 290 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 EXD3Q8N9H8 876 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 OR52E2Q8NGJ4 325 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 UBE2FQ969M7 185 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 RASD2Q96D21 266 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 LRR1Q96L50 414 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 Q96M85 177 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 TSPAN32Q96QS1 320 aa13.82□□□□□ -0.2
UPF1-206ENST00000598471 TIMP4Q99727 224 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms