RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PIK3C3Q8NEB9 887 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 LRRC58Q96CX6 371 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 MS4A3Q96HJ5 214 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 TRNT1Q96Q11 434 aaKnown RBP8.66□□□□□ -1.02
TRIM28-210ENST00000597618 GPA33Q99795 319 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 GATA5Q9BWX5 397 aaPredicted RBP8.66□□□□□ -1.02
TRIM28-210ENST00000597618 MYEF2Q9P2K5 600 aaKnown RBP8.66□□□□□ -1.02
TRIM28-210ENST00000597618 TBK1Q9UHD2 729 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 OPN4Q9UHM6 478 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 DUSP13Q9UII6 198 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 GPR160Q9UJ42 338 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 MID2Q9UJV3 735 aa8.66□□□□□ -1.02
TRIM28-210ENST00000597618 DSPPQ9NZW4 1301 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 A0A1W2PPM1 405 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 CLDN25C9JDP6 229 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 RIPK2O43353 540 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 AKAP8O43823 692 aaKnown RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 CDC14BO60729 498 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TRIM13O60858 407 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 SEC14L2O76054 403 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 AHSA1O95433 338 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 HLA-HP01893 362 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 DBIP07108 87 aaKnown RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 CHRNGP07510 517 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 RNASE1P07998 156 aaKnown RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TFPTP0C1Z6 253 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 PNMTP11086 282 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 CD79AP11912 226 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 IL7RP16871 459 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 ZNF14P17017 642 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 UQCRC2P22695 453 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 GTF2E2P29084 291 aaKnown RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 GCH1P30793 250 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 LSP1P33241 339 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 RAD52P43351 418 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 MAGEB1P43366 347 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 COPZ1P61923 177 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TEKQ02763 1124 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 BNIP2Q12982 314 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 BAMBIQ13145 260 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 FXNQ16595 210 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TUSC1Q2TAM9 212 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 MRPL2Q5T653 305 aaKnown RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 SAXO2Q658L1 398 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 WBP2NLQ6ICG8 309 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 OR4F3Q6IEY1 312 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TMEM154Q6P9G4 183 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 CADM2Q8N3J6 435 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 KIF18AQ8NI77 898 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 SLC25A28Q96A46 364 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 ZNF837Q96EG3 531 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 NEURL3Q96EH8 262 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 TIMD4Q96H15 378 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 DUX5Q96PT3 197 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 C1QTNF5Q9BXJ0 243 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 DPY30Q9C005 99 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 DENND2DQ9H6A0 471 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-210ENST00000597618 B3GNT2Q9NY97 397 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 SLC7A8Q9UHI5 535 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 ZDHHC2Q9UIJ5 367 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 FBXL3Q9UKT7 428 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 PYCARDQ9ULZ3 195 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 FZR1Q9UM11 496 aa8.65□□□□□ -1.02
TRIM28-210ENST00000597618 KMT2CQ8NEZ4 4911 aaKnown RBP8.65□□□□□ -1.03
TRIM28-210ENST00000597618 WNK1Q9H4A3 2382 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 IGHV1-69-2A0A0G2JMI3 117 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 PRAMEF27A3QJZ7 478 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 C17orf100A8MU93 164 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 CLDN34H7C241 214 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 HMGN4O00479 90 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 COPEO14579 308 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 NPIPB7O75200 414 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 RAB36O95755 333 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 G6PDP11413 515 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 RPS4Y1P22090 263 aaKnown RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 CHI3L1P36222 383 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 CRYBB2P43320 205 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 CLDN8P56748 225 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 SELENOVP59797 346 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 CCL8P80075 99 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 MAD2L1Q13257 205 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 C1DQ13901 141 aaKnown RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 PCLAFQ15004 111 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 ARMCX4Q5H9R4 360 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 HIST2H2BDQ6DRA6 164 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 LRRC74BQ6ZQY2 392 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 ZCCHC23Q6ZST2 131 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 ANKFN1Q8N957 763 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 OR8J2Q8NGG1 315 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 MFSD8Q8NHS3 518 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 AGR3Q8TD06 166 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 STK35Q8TDR2 534 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 SNX33Q8WV41 574 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 POP5Q969H6 163 aaKnown RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 C3orf30Q96M34 536 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 OXGR1Q96P68 337 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 SLC38A1Q9H2H9 487 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 MTHFD2LQ9H903 347 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 HINT3Q9NQE9 182 aaKnown RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 B3GAT1Q9P2W7 334 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms