RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 IDH3BO43837 385 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 PLGP00747 810 aaPredicted RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 IFNGP01579 166 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 IGHMP01871 453 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 GABRB1P18505 474 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 KLK2P20151 261 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 ENPP1P22413 925 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 SDHAP31040 664 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 AGFG1P52594 562 aaKnown RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 SNRPGP62308 76 aaKnown RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 H3F3AP84243 136 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 TMEM225Q6GV28 225 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 KDM8Q8N371 416 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 EXD3Q8N9H8 876 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 LSM14AQ8ND56 463 aaKnown RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 RHOXF1Q8NHV9 184 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 TSPAN32Q96QS1 320 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 TIMP4Q99727 224 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 CMC2Q9NRP2 79 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 PAQR5Q9NXK6 330 aaPredicted RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 B3GAT1Q9P2W7 334 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 TNFRSF10DQ9UBN6 386 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 GRHPRQ9UBQ7 328 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 AASSQ9UDR5 926 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 RASD1Q9Y272 281 aa13.11□□□□□ -0.31
VRK3-212ENST00000596814 TPRP12270 2363 aaKnown RBP13.11□□□□□ -0.31
VRK3-212ENST00000596814 TEX13CA0A0J9YWL9 993 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 A0A1W2PRG6 482 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 IMPA2O14732 288 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 SMAD9O15198 467 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 TLX2O43763 284 aaPredicted RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 SLC2A10O95528 541 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 HIST1H1CP16403 213 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 ZNF3P17036 446 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 POU3F1Q03052 451 aaPredicted RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 CDK5R2Q13319 367 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 C3AR1Q16581 482 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 EMC4Q5J8M3 183 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 GPR139Q6DWJ6 353 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 UGT2A3Q6UWM9 527 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 PXKQ7Z7A4 578 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 GPAT4Q86UL3 456 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 CCDC103Q8IW40 242 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 UEVLDQ8IX04 471 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 TEX19Q8NA77 164 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 TMEM163Q8TC26 289 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 APH1BQ8WW43 257 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 RASD2Q96D21 266 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 WDYHV1Q96HA8 205 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 ZNF845Q96IR2 970 aaPredicted RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 Q96M85 177 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 UCN2Q96RP3 112 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 SLC25A18Q9H1K4 315 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 TXNIPQ9H3M7 391 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 KLHL21Q9UJP4 597 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 CAMK2AQ9UQM7 478 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 GPR52Q9Y2T5 361 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 NOX1Q9Y5S8 564 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 PKD1L2Q7Z442 2459 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 DSPP15924 2871 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 ZZEF1O43149 2961 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 MAP1BP46821 2468 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 NPIPB13A6NJU9 1138 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 NPIPB4C9JG80 1138 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 RAMP1O60894 148 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 WBP4O75554 376 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 VAMP5O95183 116 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 TXNDC12O95881 172 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 HLA-DOBP13765 273 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 CPN1P15169 458 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 DAP3P51398 398 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 RPL27P61353 136 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 EFNB1P98172 346 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 HSF1Q00613 529 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 TEKQ02763 1124 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 KRR1Q13601 381 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 ACKR1Q16570 336 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 ZNF786Q8N393 782 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 SDR9C7Q8NEX9 313 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 OR52E2Q8NGJ4 325 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 OR4K13Q8NH42 304 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 SARAFQ96BY9 339 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 GPR137Q96N19 417 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 OXGR1Q96P68 337 aa13.1□□□□□ -0.31
VRK3-212ENST00000596814 NR1H4Q96RI1 486 aaPredicted RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 ZNF346Q9UL40 294 aaKnown RBP13.1□□□□□ -0.31
VRK3-212ENST00000596814 TLN1Q9Y490 2541 aaKnown RBP13.09□□□□□ -0.31
VRK3-212ENST00000596814 BOD1L1Q8NFC6 3051 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 LOC102725191A0A1B0GVB3 256 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 WISP2O76076 250 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 SFTPCP11686 197 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 FMO3P31513 532 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 CHN2P52757 468 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.09□□□□□ -0.31
VRK3-212ENST00000596814 C1DQ13901 141 aaKnown RBP13.09□□□□□ -0.31
VRK3-212ENST00000596814 MELKQ14680 651 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 C6orf141Q5SZD1 244 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 ABLIM2Q6H8Q1 611 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 CHMP1BQ7LBR1 199 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 JAZF1Q86VZ6 243 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms