RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TBL1XR1Q9BZK7 514 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 CDCP1Q9H5V8 836 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 HHATLQ9HCP6 504 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 MAN2C1Q9NTJ4 1040 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 CLN6Q9NWW5 311 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 MYOTQ9UBF9 498 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 KCNE5Q9UJ90 142 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 MED31Q9Y3C7 131 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 CHST2Q9Y4C5 530 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 PCDHGB5Q9Y5G0 923 aa9.24□□□□□ -0.93
SS18-221ENST00000582448 SETD2Q9BYW2 2564 aaPredicted RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 A0A087WUU8 490 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 TRBV11-1A0A0K0K1C0 115 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 CENPVL1A0A0U1RR11 272 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 A0A1W2PQ72 361 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 DPPA5A6NC42 116 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 NKX2-6A6NCS4 301 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 E9PLN8 166 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 NPIPB9F8W1W9 429 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 ZNF264O43296 627 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 CHP2O43745 196 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 CDC40O60508 579 aaKnown RBP eCLIP9.23□□□□□ -0.93
SS18-221ENST00000582448 FAM20BO75063 409 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 ZFAND5O76080 213 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 TPOP07202 933 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 SP1P08047 785 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 LINGO3P0C6S8 592 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 NAGAP17050 411 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 FPR3P25089 353 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 RBM34P42696 430 aaKnown RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 SLC6A8P48029 635 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 CCR4P51679 360 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 TSPAN31Q12999 210 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 MAD2L1BPQ15013 274 aaPredicted RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 PTGES3Q15185 160 aaKnown RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 EXT1Q16394 746 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 KLHL26Q53HC5 615 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 PRR31Q5SQ13 230 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 FOXB2Q5VYV0 432 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 PLAG1Q6DJT9 500 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 SLC25A25Q6KCM7 469 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 ZNF773Q6PK81 442 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 PTCHD4Q6ZW05 846 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 CADM2Q8N3J6 435 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 LSMEM1Q8N8F7 131 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 MDS2Q8NDY4 140 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 OR4C3Q8NH37 302 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 NUBPLQ8TB37 319 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 SLC22A8Q8TCC7 542 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 PHOSPHO1Q8TCT1 267 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 DNAJA4Q8WW22 397 aaPredicted RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 TMEM239Q8WW34 195 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 TRUB1Q8WWH5 349 aaKnown RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 OSTF1Q92882 214 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 TMCO6Q96DC7 493 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 OMA1Q96E52 524 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 SLC38A2Q96QD8 506 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 VKORC1Q9BQB6 163 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 RSPO3Q9BXY4 272 aaPredicted RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 DEFB126Q9BYW3 111 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 EXOSC3Q9NQT5 275 aaKnown RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 RASSF1Q9NS23 344 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 LRFN1Q9P244 771 aa9.23□□□□□ -0.93
SS18-221ENST00000582448 PPIEQ9UNP9 301 aaKnown RBP9.23□□□□□ -0.93
SS18-221ENST00000582448 A0A1B0GTH9 108 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 A0A1W2PQD3 144 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 HTR3EA5X5Y0 456 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 SNTNA6NMZ2 147 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ZAR1LA6NP61 321 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 SLC1A7O00341 560 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ADAM10O14672 748 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 EIF4E2O60573 245 aaKnown RBP9.22□□□□□ -0.93
SS18-221ENST00000582448 MRPS14O60783 128 aaKnown RBP9.22□□□□□ -0.93
SS18-221ENST00000582448 NGFRP08138 427 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 SMIM18P0DKX4 95 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 PNMTP11086 282 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 PRG2P13727 222 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 CHMP24386 653 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 CRHBPP24387 322 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 TTKP33981 857 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 RFC3P40938 356 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 GSSP48637 474 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 APOFQ13790 326 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ALG10BQ5I7T1 473 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 WBP2NLQ6ICG8 309 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 RPL13AP3Q6NVV1 102 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 TEPPQ6URK8 271 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ZER1Q7Z7L7 766 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 MISPQ8IVT2 679 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 NKAIN4Q8IVV8 208 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 NRMQ8IXM6 262 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 PRR22Q8IZ63 422 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 CYP4Z2PQ8N1L4 340 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ZNF540Q8NDQ6 660 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 OR52L1Q8NGH7 329 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 ZNF563Q8TA94 476 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 CNIH3Q8TBE1 160 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 TMEM255BQ8WV15 326 aa9.22□□□□□ -0.93
SS18-221ENST00000582448 IPCEF1Q8WWN9 437 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms