RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 HMBOX1Q6NT76 420 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 CBLL1Q75N03 491 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 NANOGNBQ7Z5D8 188 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 NKAIN4Q8IVV8 208 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 PGAM4Q8N0Y7 254 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 GPR137CQ8N3F9 429 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 ANKS4BQ8N8V4 417 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 ADPRHL1Q8NDY3 354 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 TMEM255BQ8WV15 326 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 PRRC1Q96M27 445 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 MRPL39Q9NYK5 338 aaKnown RBP17.16■□□□□ 0.34
SS18-209ENST00000578595 B3GAT1Q9P2W7 334 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 RHCGQ9UBD6 479 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 RAI1Q7Z5J4 1906 aaPredicted RBP17.15■□□□□ 0.34
SS18-209ENST00000578595 OR6C65A6NJZ3 312 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 RNF13O43567 381 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 HPRP00739 348 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 CD3EP07766 207 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 UGT2B15P54855 530 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 ST3GAL3Q11203 375 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 ZNF74Q16587 644 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 LINC00114Q6XXX2 140 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 ZNF704Q6ZNC4 412 aaPredicted RBP17.15■□□□□ 0.34
SS18-209ENST00000578595 P2RY8Q86VZ1 359 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 DEFB107AQ8IZN7 70 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 PFN4Q8NHR9 129 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 NINJ1Q92982 152 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 PRSS27Q9BQR3 290 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 EMC6Q9BV81 110 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 FNDC11Q9BVV2 318 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 SLC19A3Q9BZV2 496 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 FKRPQ9H9S5 495 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 RCE1Q9Y256 329 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 MED31Q9Y3C7 131 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 CSMD2Q7Z408 3487 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 PLCE1Q9P212 2302 aa17.15■□□□□ 0.34
SS18-209ENST00000578595 ZNF726A6NNF4 738 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 MS4A18H0YCH9 400 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 TRAF3IP2O43734 574 aaPredicted RBP17.14■□□□□ 0.33
SS18-209ENST00000578595 HLA-DOBP13765 273 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 RBM34P42696 430 aaKnown RBP17.14■□□□□ 0.33
SS18-209ENST00000578595 ZNF83P51522 516 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 MNAT1P51948 309 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 ROR2Q01974 943 aaKnown RBP17.14■□□□□ 0.33
SS18-209ENST00000578595 GABRA6Q16445 453 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 MS4A18Q3C1V0 323 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 SAMD4BQ5PRF9 694 aaKnown RBP17.14■□□□□ 0.33
SS18-209ENST00000578595 CYP4Z1Q86W10 505 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 FITM2Q8N6M3 262 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 LRRC17Q8N6Y2 441 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 RBM15BQ8NDT2 890 aaKnown RBP17.14■□□□□ 0.33
SS18-209ENST00000578595 PIK3C3Q8NEB9 887 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 TMEM239Q8WW34 195 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 SGTBQ96EQ0 304 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 CDRT15Q96T59 188 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 C1QTNF6Q9BXI9 259 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 AMBRA1Q9C0C7 1298 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 MED29Q9NX70 200 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 ZNF229Q9UJW7 825 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 ADAM21Q9UKJ8 722 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 RNF115Q9Y4L5 304 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 NOX1Q9Y5S8 564 aa17.14■□□□□ 0.33
SS18-209ENST00000578595 J3KTA2 159 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 M0R1B8 84 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 PLPP3O14495 311 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 PIP5K1CO60331 668 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 FZD7O75084 574 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 UPK3AO75631 287 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 PLAUP00749 431 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 MT-ND1P03886 318 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 MSX2P35548 267 aaPredicted RBP17.13■□□□□ 0.33
SS18-209ENST00000578595 BSPH1Q075Z2 132 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 ADAM5Q6NVV9 412 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 KLHL17Q6TDP4 642 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 HS6ST2Q96MM7 605 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 MEPEQ9NQ76 525 aaPredicted RBP17.13■□□□□ 0.33
SS18-209ENST00000578595 MAGEL2Q9UJ55 1249 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 SAMD4AQ9UPU9 718 aaKnown RBP17.13■□□□□ 0.33
SS18-209ENST00000578595 SNX13Q9Y5W8 968 aa17.13■□□□□ 0.33
SS18-209ENST00000578595 B2RBV5 119 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 BLOC1S5-TXNDC5H3BN57 136 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 M0R3G1 203 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 THRBP10828 461 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 UBE2NP61088 152 aaKnown RBP17.12■□□□□ 0.33
SS18-209ENST00000578595 CAMK2DQ13557 499 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 KRT72Q14CN4 511 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 HIKESHIQ53FT3 197 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 NCMAPQ5T1S8 102 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 SSX8Q7RTT4 187 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 OFCC1Q8IZS5 231 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
SS18-209ENST00000578595 C1orf162Q8NEQ5 155 aaPredicted RBP17.12■□□□□ 0.33
SS18-209ENST00000578595 ANKK1Q8NFD2 765 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 OR6N1Q8NGY5 312 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 NSL1Q96IY1 281 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 OR2M2Q96R28 347 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 CCL19Q99731 98 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 ZNF426Q9BUY5 554 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 B3GAT2Q9NPZ5 323 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 A4GNTQ9UNA3 340 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms