RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SAXO2Q658L1 398 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 TMEM225Q6GV28 225 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 BRICD5Q6PL45 260 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 SPATC1Q76KD6 591 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 GRINAQ7Z429 371 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 C1QL4Q86Z23 238 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 FAM169BQ8N8A8 192 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 OR7A2PQ8NGA2 310 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 OR9K2Q8NGE7 335 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 BCL2L2Q92843 193 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 TMEM45BQ96B21 275 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 TMIGD2Q96BF3 282 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 BOD1Q96IK1 185 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 MAGEB18Q96M61 343 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 ALKBH3Q96Q83 286 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 SYT3Q9BQG1 590 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 CCDC28BQ9BUN5 200 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 CCDC106Q9BWC9 280 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 MRPL37Q9BZE1 423 aaKnown RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 SEC61A2Q9H9S3 476 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 MED4Q9NPJ6 270 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 SDR39U1Q9NRG7 319 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 SIRT3Q9NTG7 399 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 INTS9Q9NV88 658 aaKnown RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 AIG1Q9NVV5 245 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 THUMPD1Q9NXG2 353 aaKnown RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 CRNNQ9UBG3 495 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 GPR45Q9Y5Y3 372 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 A0A1B0GUS0 222 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 A0A1W2PPW3 197 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 TPD52L2O43399 206 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 CDC14BO60729 498 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 SCN2BO60939 215 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 IGKV3-15P01624 115 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 IGLV1-44P01699 117 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 CRYBA1P05813 215 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 RNASE1P07998 156 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 CELA3BP08861 270 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 ZCCHC18P0CG32 403 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 UQCRC2P22695 453 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 OMGP23515 440 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 HTR3AP46098 478 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 SH3BGRP55822 239 aaPredicted RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 MRPS11P82912 194 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 H3F3AP84243 136 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 GALK2Q01415 458 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 NKPD1Q17RQ9 610 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 TTMPQ5BVD1 217 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 PAQR6Q6TCH4 344 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 EPGNQ6UW88 154 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 DOK3Q7L591 496 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 MAGEE2Q8TD90 523 aaPredicted RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 MGARPQ8TDB4 240 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 DYDC1Q8WWB3 177 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 YIPF5Q969M3 257 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 LRRC58Q96CX6 371 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 TIMD4Q96H15 378 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 CCDC115Q96NT0 180 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 ZNF385AQ96PM9 386 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 C1orf50Q9BV19 199 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 SF3B5Q9BWJ5 86 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 NMUR2Q9GZQ4 415 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 RABEP2Q9H5N1 569 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 BEX1Q9HBH7 125 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 NOX3Q9HBY0 568 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 PNPOQ9NVS9 261 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 PDP1Q9P0J1 537 aaPredicted RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 DUSP13Q9UII6 198 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 GPR160Q9UJ42 338 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 NUP50Q9UKX7 468 aa9.5□□□□□ -0.89
VPS53-207ENST00000570510 ZNF346Q9UL40 294 aaKnown RBP9.5□□□□□ -0.89
VPS53-207ENST00000570510 NPIPB9F8W1W9 429 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 UBDO15205 165 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 STX11O75558 287 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 GPIP06744 558 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 NR4A1P22736 598 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 S100A3P33764 101 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 ATP4BP51164 291 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 SEC24CP53992 1094 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 SELENOVP59797 346 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 RPS23P62266 143 aaKnown RBP9.49□□□□□ -0.89
VPS53-207ENST00000570510 HBA1P69905 142 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 LCN2P80188 198 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 TEKQ02763 1124 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 TRMT5Q32P41 509 aaKnown RBP9.49□□□□□ -0.89
VPS53-207ENST00000570510 METTL21CQ5VZV1 264 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 NIPAL3Q6P499 406 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 TMEM154Q6P9G4 183 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 ZNF771Q7L3S4 317 aaPredicted RBP9.49□□□□□ -0.89
VPS53-207ENST00000570510 ADGRG3Q86Y34 549 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 CLHC1Q8NHS4 586 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 ST7LQ8TDW4 575 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 TSPEARQ8WU66 669 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 DVL3Q92997 716 aaPredicted RBP9.49□□□□□ -0.89
VPS53-207ENST00000570510 MS4A7Q9GZW8 240 aaPredicted RBP9.49□□□□□ -0.89
VPS53-207ENST00000570510 ZNF385DQ9H6B1 395 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 RMND5AQ9H871 391 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 EXD2Q9NVH0 621 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 GPATCH2Q9NW75 528 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 MKLN1Q9UL63 735 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms