RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ZNF350Q9GZX5 532 aa9.98□□□□□ -0.81
CLK3-226ENST00000569406 C1GALT1Q9NS00 363 aa9.98□□□□□ -0.81
CLK3-226ENST00000569406 FBXL3Q9UKT7 428 aa9.98□□□□□ -0.81
CLK3-226ENST00000569406 MMP7P09237 267 aaPredicted RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 NR2F6P10588 404 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 UROSP10746 265 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 IRS1P35568 1242 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 CHI3L1P36222 383 aaPredicted RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 PTTG1IPP53801 180 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 H2BFSP57053 126 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 NKX6-1P78426 367 aaPredicted RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 HIST2H3PS2Q5TEC6 136 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 PRAMEF20Q5VT98 475 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SLC22A10Q63ZE4 541 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 ZNF529Q6P280 563 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 ZNF705AQ6ZN79 300 aaPredicted RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 GAREM2Q75VX8 874 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 ANKRD33Q7Z3H0 272 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 GOLGA7Q7Z5G4 137 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 LRP11Q86VZ4 500 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 CACUL1Q86Y37 369 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 ARL14Q8N4G2 192 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 CLDN19Q8N6F1 224 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 KRTCAP2Q8N6L1 136 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 OR11G2Q8NGC1 345 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 OR4A4PQ8NGN8 299 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 TNFAIP8L1Q8WVP5 186 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 GPR173Q9NS66 373 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 CRLS1Q9UJA2 301 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 VCANP13611 3396 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 ARID1BQ8NFD5 2236 aaPredicted RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 TRBV5-4A0A0C4DH59 114 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SHISA3A0PJX4 238 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 C7orf77A4D0Y5 90 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 C22orf46C9J442 243 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SYT5O00445 386 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 NOVA1P51513 510 aaKnown RBP9.97□□□□□ -0.81
CLK3-226ENST00000569406 CDH12P55289 794 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SEC13P55735 322 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 CD81P60033 236 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 PPIGQ13427 754 aaKnown RBP eCLIP9.97□□□□□ -0.815e-7■■■□□ 18.1
CLK3-226ENST00000569406 LGI4Q8N135 537 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 OR14C36Q8NHC7 312 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 WFDC12Q8WWY7 111 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 AKR1E2Q96JD6 320 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 FAAP24Q9BTP7 215 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SLITRK2Q9H156 845 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 SEC61A2Q9H9S3 476 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 FKRPQ9H9S5 495 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 RCE1Q9Y256 329 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 PCDHB1Q9Y5F3 818 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 MYO15AQ9UKN7 3530 aa9.97□□□□□ -0.81
CLK3-226ENST00000569406 A0A1W2PPE2 198 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 C20orf202A1L168 122 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 PRICKLE3O43900 615 aaPredicted RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 PQBP1O60828 265 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 OR2A4O95047 310 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 SOD2P04179 222 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 SRPRAP08240 638 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 TMEM244Q5VVB8 128 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 TXNDC8Q6A555 127 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 FAM151BQ6UXP7 276 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 ERN2Q76MJ5 926 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 KCTD9Q7L273 389 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 PTOV1Q86YD1 416 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 SLC30A8Q8IWU4 369 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 IZUMO1Q8IYV9 350 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 FAM98AQ8NCA5 519 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 FIBINQ8TAL6 211 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 ZNF296Q8WUU4 475 aaPredicted RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 OR2A7Q96R45 310 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 INSM2Q96T92 566 aaPredicted RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 FAM120CQ9NX05 1096 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 SEMA5BQ9P283 1151 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 KCND3Q9UK17 655 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 A0A1B0GUH1 482 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 TMEM235A6NFC5 223 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 AQP7O14520 342 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 AHSA1O95433 338 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 PTBP3O95758 552 aaKnown RBP9.96□□□□□ -0.81
CLK3-226ENST00000569406 SOD1P00441 154 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 EPORP19235 508 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 C2orf68Q2NKX9 166 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 AWAT1Q58HT5 328 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 CRB2Q5IJ48 1285 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 DCAF12L2Q5VW00 463 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 C6orf120Q7Z4R8 191 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 SLC39A11Q8N1S5 342 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 C11orf42Q8N5U0 333 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 PPP1R16AQ96I34 528 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 TSSK6Q9BXA6 273 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 IL26Q9NPH9 171 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 SLC6A13Q9NSD5 602 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 CLEC5AQ9NY25 188 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 FOXJ2Q9P0K8 574 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 DKKL1Q9UK85 242 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 MMP24Q9Y5R2 645 aa9.96□□□□□ -0.81
CLK3-226ENST00000569406 RFXANKO14593 260 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 TBL1XO60907 577 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 SCGNO76038 276 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms