RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 B3GAT1Q9P2W7 334 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 SEC14L4Q9UDX3 406 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 CD300AQ9UGN4 299 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 A4GNTQ9UNA3 340 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 AKAP6Q13023 2319 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 TRAF3IP2O43734 574 aaPredicted RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 CH25HO95992 272 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 EDNRAP25101 427 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 MPGP29372 298 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 SELENOPP49908 381 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 UGT2B15P54855 530 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 SH3BGRP55822 239 aaPredicted RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 PPA1Q15181 289 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 DNAL1Q4LDG9 190 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 TSPO2Q5TGU0 170 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 RRM2BQ7LG56 351 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 PXKQ7Z7A4 578 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 LSRQ86X29 649 aaPredicted RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 CDC20BQ86Y33 519 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 EPHX4Q8IUS5 362 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 NKAIN4Q8IVV8 208 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 KDM8Q8N371 416 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 GPR137CQ8N3F9 429 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 C17orf78Q8N4C9 275 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 ZNF433Q8N7K0 673 aaPredicted RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 POP5Q969H6 163 aaKnown RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 SGTBQ96EQ0 304 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 PIK3IP1Q96FE7 263 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 LINC00470Q9BZP3 86 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 ESRP2Q9H6T0 727 aaKnown RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 B3GAT2Q9NPZ5 323 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 SLC7A10Q9NS82 523 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 MAGED1Q9Y5V3 778 aaPredicted RBP11.46□□□□□ -0.57
CLK3-224ENST00000568605 ENPP4Q9Y6X5 453 aa11.46□□□□□ -0.57
CLK3-224ENST00000568605 FBN2P35556 2912 aa11.46□□□□□ -0.58
CLK3-224ENST00000568605 LRBAP50851 2863 aa11.46□□□□□ -0.58
CLK3-224ENST00000568605 TEX15Q9BXT5 2789 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 TACC2O95359 2948 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 OR5H1A6NKK0 313 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 ZNF726A6NNF4 738 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 LRRN3E7EW58 273 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 C11orf98E9PRG8 122 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 PLPP3O14495 311 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 RNF13O43567 381 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 SERPINI2O75830 405 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 HRGP04196 525 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 ITGA5P08648 1049 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 ASAH2BP0C7U1 165 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 RHCEP18577 417 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 YAP1P46937 504 aaKnown RBP11.45□□□□□ -0.58
CLK3-224ENST00000568605 LTBQ06643 244 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 TSC22D1Q15714 1073 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 TAB1Q15750 504 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 HMBOX1Q6NT76 420 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 CDK20Q8IZL9 346 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 ZIC4Q8N9L1 334 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 ACOT11Q8WXI4 607 aaPredicted RBP11.45□□□□□ -0.58
CLK3-224ENST00000568605 ADAD1Q96M93 576 aaKnown RBP11.45□□□□□ -0.58
CLK3-224ENST00000568605 NDEL1Q9GZM8 345 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 MEPEQ9NQ76 525 aaPredicted RBP11.45□□□□□ -0.58
CLK3-224ENST00000568605 ACTR3BQ9P1U1 418 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 STX18Q9P2W9 335 aaKnown RBP11.45□□□□□ -0.58
CLK3-224ENST00000568605 TMEM5Q9Y2B1 443 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 AMDHD2Q9Y303 409 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 V9GYQ6 96 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 POLQO75417 2590 aa11.45□□□□□ -0.58
CLK3-224ENST00000568605 SPG11Q96JI7 2443 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 DEFB108AA8MXU0 73 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 MS4A18H0YCH9 400 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 J3KTA2 159 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 PDLIM1O00151 329 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 OR7A10O76100 309 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 ZNF432O94892 652 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 THBDP07204 575 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 H1F0P07305 194 aaKnown RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 SAGP10523 405 aaPredicted RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 IFI30P13284 250 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 PAX7P23759 505 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 NTF4P34130 210 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 KRTAP10-9P60411 292 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 ZP4Q12836 540 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 FOXD4Q12950 439 aaPredicted RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 TAF11Q15544 211 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 MS4A18Q3C1V0 323 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 ANKDD1AQ495B1 522 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 FGD3Q5JSP0 725 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 ALKBH2Q6NS38 261 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 KLHL17Q6TDP4 642 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 ZNF730Q6ZMV8 503 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 RINLQ6ZS11 566 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 SLC46A3Q7Z3Q1 461 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 RNF113BQ8IZP6 322 aaKnown RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 PFN4Q8NHR9 129 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 BPIFA2Q96DR5 249 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 PYURFQ96I23 114 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 TRIM15Q9C019 465 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 MOV10Q9HCE1 1003 aaKnown RBP11.44□□□□□ -0.58
CLK3-224ENST00000568605 RHCGQ9UBD6 479 aa11.44□□□□□ -0.58
CLK3-224ENST00000568605 PLCE1Q9P212 2302 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms