RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ULK3Q6PHR2 472 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 DHRS4L2Q6PKH6 230 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 H1FNTQ75WM6 255 aaPredicted RBP13.97□□□□□ -0.17
CLN3-229ENST00000567963 ZNF417Q8TAU3 575 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 ZNF837Q96EG3 531 aaPredicted RBP13.97□□□□□ -0.17
CLN3-229ENST00000567963 ZNF587Q96SQ5 575 aaPredicted RBP13.97□□□□□ -0.17
CLN3-229ENST00000567963 VRK1Q99986 396 aaPredicted RBP13.97□□□□□ -0.17
CLN3-229ENST00000567963 SPATA5L1Q9BVQ7 753 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 PRR14Q9BWN1 585 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 SEC61A2Q9H9S3 476 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 GPR35Q9HC97 309 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 SLCO1B3Q9NPD5 702 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 TRAV36DV7A0A075B6V5 113 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 MS4A18H0YCH9 400 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 NDUFS8O00217 210 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 PDE5AO76074 875 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 FAM157CP0CG43 387 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 CBR1P16152 277 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 GPX2P18283 190 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 PPIBP23284 216 aaKnown RBP13.96□□□□□ -0.17
CLN3-229ENST00000567963 GRPRP30550 384 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 C1DQ13901 141 aaKnown RBP13.96□□□□□ -0.17
CLN3-229ENST00000567963 MS4A18Q3C1V0 323 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 AGBL2Q5U5Z8 902 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 FAM91A1Q658Y4 838 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 VHLLQ6RSH7 139 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 KRT73Q86Y46 540 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 GPR137CQ8N3F9 429 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 OR4F15Q8NGB8 312 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 CCDC28BQ9BUN5 200 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 PLK3Q9H4B4 646 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 TMEM38AQ9H6F2 299 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 CRLF2Q9HC73 371 aa13.96□□□□□ -0.17
CLN3-229ENST00000567963 TRBV5-3A0A0A0MS03 114 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 RNF212BA8MTL3 300 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 CELA3BP08861 270 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 CBLP22681 906 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 NR4A2P43354 598 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 EFNB3Q15768 340 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 CEACAM16Q2WEN9 425 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 SLC46A3Q7Z3Q1 461 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 MYPOPQ86VE0 399 aaPredicted RBP13.95□□□□□ -0.18
CLN3-229ENST00000567963 ANKS4BQ8N8V4 417 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 ADPRHL1Q8NDY3 354 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 PIK3C3Q8NEB9 887 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 NUP37Q8NFH4 326 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 LRRC8CQ8TDW0 803 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 SLC47A1Q96FL8 570 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 SLC41A3Q96GZ6 507 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 FOXN4Q96NZ1 517 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 OR2M2Q96R28 347 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 PIMREGQ9BSJ6 248 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 BEX2Q9BXY8 128 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 IKZF5Q9H5V7 419 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 MYOZ1Q9NP98 299 aaPredicted RBP13.95□□□□□ -0.18
CLN3-229ENST00000567963 FBN3Q75N90 2809 aa13.95□□□□□ -0.18
CLN3-229ENST00000567963 A0A087WUJ7 227 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 LOC390937A0A1W2PQ73 354 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 ZNF503-AS2A6NEH8 195 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 ZNF99A8MXY4 864 aaPredicted RBP13.94□□□□□ -0.18
CLN3-229ENST00000567963 TRAF3IP2O43734 574 aaPredicted RBP13.94□□□□□ -0.18
CLN3-229ENST00000567963 TPST2O60704 377 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 SLC6A2P23975 617 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 ARR3P36575 388 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 IL1RL1Q01638 556 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 HGFACQ04756 655 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 SCARB2Q14108 478 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 GGTLC2Q14390 218 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 MFSD13AQ14CX5 517 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 OR1Q1Q15612 314 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 ADRM1Q16186 407 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 CCDC36Q8IYA8 594 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 TMEM123Q8N131 208 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 BHLHE22Q8NFJ8 381 aaPredicted RBP13.94□□□□□ -0.18
CLN3-229ENST00000567963 OR6S1Q8NH40 331 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 ZNF607Q96SK3 696 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 WFDC6Q9BQY6 131 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 TMEM27Q9HBJ8 222 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 KLHL14Q9P2G3 628 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 TESQ9UGI8 421 aaKnown RBP13.94□□□□□ -0.18
CLN3-229ENST00000567963 CORO2BQ9UQ03 480 aa13.94□□□□□ -0.18
CLN3-229ENST00000567963 MALRD1Q5VYJ5 2156 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 A0A0B4J2E0 115 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 A0A1B0GX12 115 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 PRORSD1PA6NEY8 169 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 EVPLLA8MZ36 301 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 AKAP8O43823 692 aaKnown RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 LMX1BO60663 402 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 HPRP00739 348 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 HLA-DOBP13765 273 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 NQO1P15559 274 aaKnown RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 ZNF16P17020 682 aaPredicted RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 GZMKP49863 264 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 PPOXP50336 477 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 IDH3GP51553 393 aaPredicted RBP13.93□□□□□ -0.18
CLN3-229ENST00000567963 AQP5P55064 265 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 NCALDP61601 193 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 AGKQ53H12 422 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 PHYHD1Q5SRE7 291 aa13.93□□□□□ -0.18
CLN3-229ENST00000567963 UEVLDQ8IX04 471 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms