RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SH3GL1Q99961 368 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 CACNG6Q9BXT2 260 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 BARX1Q9HBU1 254 aaPredicted RBP18.12■□□□□ 0.49
CLN3-219ENST00000565778 MRGBPQ9NV56 204 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 FGFR1OP2Q9NVK5 253 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 MOKQ9UQ07 419 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 CORINQ9Y5Q5 1042 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 CPSF4LA6NMK7 179 aaKnown RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 RNF223E7ERA6 249 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 AKAP8O43823 692 aaKnown RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 FMO6PO60774 539 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 FZD7O75084 574 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 ZNF432O94892 652 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 BGLAPP02818 100 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 PAX7P23759 505 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 ARF1P84077 181 aaKnown RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 NRF1Q16656 503 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 TRMT5Q32P41 509 aaKnown RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 KRTAP21-3Q3LHN1 58 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 SWT1Q5T5J6 900 aaKnown RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 ZNF613Q6PF04 617 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 PIK3C3Q8NEB9 887 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 OR6T1Q8NGN1 323 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 VANGL1Q8TAA9 524 aaPredicted RBP18.11■□□□□ 0.49
CLN3-219ENST00000565778 KCNS3Q9BQ31 491 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 ECSITQ9BQ95 431 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 TMEM43Q9BTV4 400 aa18.11■□□□□ 0.49
CLN3-219ENST00000565778 LOC100653049A0A140TA62 436 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 SSX4O60224 188 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 KRT34O76011 436 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 HOXB1P14653 301 aaPredicted RBP18.1■□□□□ 0.49
CLN3-219ENST00000565778 APOBEC3AP31941 199 aaPredicted RBP18.1■□□□□ 0.49
CLN3-219ENST00000565778 PCGF2P35227 344 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 KLF10Q13118 480 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 RAB35Q15286 201 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 VMACQ2NL98 169 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 ENTPD8Q5MY95 495 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 CARD17Q5XLA6 110 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 ZNF544Q6NX49 715 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 RBM45Q8IUH3 476 aaKnown RBP18.1■□□□□ 0.49
CLN3-219ENST00000565778 ADPRHL1Q8NDY3 354 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 ANKK1Q8NFD2 765 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 MAGEE2Q8TD90 523 aaPredicted RBP18.1■□□□□ 0.49
CLN3-219ENST00000565778 LRRC58Q96CX6 371 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 SLC41A3Q96GZ6 507 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 MOGAT1Q96PD6 335 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 SLC38A2Q96QD8 506 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 OR2M2Q96R28 347 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 EMC6Q9BV81 110 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 REG4Q9BYZ8 158 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 GPR35Q9HC97 309 aa18.1■□□□□ 0.49
CLN3-219ENST00000565778 IGHV1-18A0A0C4DH31 117 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 LRRN3E7EW58 273 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 ATP6V1G2-DDX39BF2Z307 99 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 RPL36A-HNRNPH2H7BZ11 118 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 BMP4P12644 408 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 HLA-DOBP13765 273 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 AHCYP23526 432 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 GZMMP51124 257 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 SH3BGRP55822 239 aaPredicted RBP18.09■□□□□ 0.49
CLN3-219ENST00000565778 TUBA1BP68363 451 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 TUBA4AP68366 448 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 CHRNB3Q05901 458 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 NPTX1Q15818 432 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 CEACAM16Q2WEN9 425 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 RABL3Q5HYI8 236 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 C11orf71Q6IPW1 123 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 TTC33Q6PID6 262 aaPredicted RBP18.09■□□□□ 0.49
CLN3-219ENST00000565778 LINC00114Q6XXX2 140 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 TUBA1AQ71U36 451 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 SCAIQ8N9R8 606 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 MAPK1IP1LQ8NDC0 245 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 RASSF5Q8WWW0 418 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 ZNF317Q96PQ6 595 aaPredicted RBP18.09■□□□□ 0.49
CLN3-219ENST00000565778 CRLF2Q9HC73 371 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 SAR1AQ9NR31 198 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 ZNF446Q9NWS9 450 aa18.09■□□□□ 0.49
CLN3-219ENST00000565778 MRPL39Q9NYK5 338 aaKnown RBP18.09■□□□□ 0.49
CLN3-219ENST00000565778 ARPC4-TTLL3A0A0A6YYG9 625 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 M0R3G1 203 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 MRASO14807 208 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 TRAF3IP2O43734 574 aaPredicted RBP18.08■□□□□ 0.48
CLN3-219ENST00000565778 CHP2O43745 196 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 HPRP00739 348 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 NPPAP01160 153 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 CRYAAP02489 173 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 CD247P20963 164 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 PCSK6P29122 969 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 NUDT6P53370 316 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 POU3F1Q03052 451 aaPredicted RBP18.08■□□□□ 0.48
CLN3-219ENST00000565778 MAPRE2Q15555 327 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 OR4D11Q8NGI4 311 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 ADAMTS16Q8TE57 1224 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 TAMM41Q96BW9 452 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 ZNF837Q96EG3 531 aaPredicted RBP18.08■□□□□ 0.48
CLN3-219ENST00000565778 TXNDC15Q96J42 360 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 RHNO1Q9BSD3 238 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 SLC7A7Q9UM01 511 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 NOX1Q9Y5S8 564 aa18.08■□□□□ 0.48
CLN3-219ENST00000565778 PMF1-BGLAPU3KQ54 211 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms