RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GSK3BP49841 420 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 SELENOPP49908 381 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 SH3BGRP55822 239 aaPredicted RBP11.78□□□□□ -0.52
CLK3-213ENST00000563842 PUDPQ08623 228 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 HMBOX1Q6NT76 420 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 ADAM5Q6NVV9 412 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 KLHL24Q6TFL4 600 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 TMEM108Q6UXF1 575 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 PXKQ7Z7A4 578 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 ANKS4BQ8N8V4 417 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 PIK3C3Q8NEB9 887 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 BOD1Q96IK1 185 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 RADILQ96JH8 1075 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 TMEM204Q9BSN7 226 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 ZNF426Q9BUY5 554 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 CXXC4Q9H2H0 198 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 OBP2BQ9NPH6 170 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 NANSQ9NR45 359 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 NDE1Q9NXR1 346 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 B3GAT1Q9P2W7 334 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 RIMS3Q9UJD0 308 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 MGAT4BQ9UQ53 548 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 ZNF726A6NNF4 738 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 MS4A18H0YCH9 400 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 HS3ST1O14792 307 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 LYPD3O95274 346 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 THY1P04216 161 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 IFNW1P05000 195 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ADORA3P0DMS8 318 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.53
CLK3-213ENST00000563842 TNFRSF1BP20333 461 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 AHCYP23526 432 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 OR1E2P47887 323 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 MNAT1P51948 309 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 PRPS1P60891 318 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 LTBQ06643 244 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ST3GAL3Q11203 375 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ZNF74Q16587 644 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 MS4A18Q3C1V0 323 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 C9orf135Q5VTT2 229 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 FKBP9P1Q75LS8 142 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 CBLL1Q75N03 491 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 LSRQ86X29 649 aaPredicted RBP11.77□□□□□ -0.53
CLK3-213ENST00000563842 GPR137CQ8N3F9 429 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ZNF611Q8N823 705 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 OR52N5Q8NH56 324 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 GEMIN6Q8WXD5 167 aaKnown RBP11.77□□□□□ -0.53
CLK3-213ENST00000563842 FAM162AQ96A26 154 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 MOGAT1Q96PD6 335 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 CCL19Q99731 98 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 MOV10Q9HCE1 1003 aaKnown RBP11.77□□□□□ -0.53
CLK3-213ENST00000563842 B3GAT2Q9NPZ5 323 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 SLC17A5Q9NRA2 495 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ADA2Q9NZK5 511 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 SEC14L4Q9UDX3 406 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 TAGLN3Q9UI15 199 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 ZNF229Q9UJW7 825 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 RPS6KA6Q9UK32 745 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 SLC25A15Q9Y619 301 aa11.77□□□□□ -0.53
CLK3-213ENST00000563842 RPL36A-HNRNPH2H7BZ11 118 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PLPP3O14495 311 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 CLOCKO15516 846 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 TRAF3IP2O43734 574 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 ZNF432O94892 652 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 ZNF682O95780 498 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 CH25HO95992 272 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 MT-ND1P03886 318 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 UMPSP11172 480 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PTNP21246 168 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PTAFRP25105 342 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 FOXG1P55316 489 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 POU3F1Q03052 451 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 BSPH1Q075Z2 132 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 ZP4Q12836 540 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PIN1Q13526 163 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 IFI44LQ53G44 452 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 GKAP1Q5VSY0 366 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 WDR88Q6ZMY6 472 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 DEPDC4Q8N2C3 294 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 TMEM239Q8WW34 195 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 AKAP1Q92667 903 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLK3-213ENST00000563842 FBXW5Q969U6 566 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 LRR1Q96L50 414 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PRRC1Q96M27 445 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 ALKBH3Q96Q83 286 aaPredicted RBP11.76□□□□□ -0.53
CLK3-213ENST00000563842 CCT8L2Q96SF2 557 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 PRSS27Q9BQR3 290 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 MED31Q9Y3C7 131 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 NF1P21359 2839 aa11.76□□□□□ -0.53
CLK3-213ENST00000563842 DPRXA6NFQ7 191 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 LRRN3E7EW58 273 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 KPNA4O00629 521 aaPredicted RBP11.75□□□□□ -0.53
CLK3-213ENST00000563842 ARHGEF9O43307 516 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 SHOX2O60902 331 aaPredicted RBP11.75□□□□□ -0.53
CLK3-213ENST00000563842 SMPD2O60906 423 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 UPK3AO75631 287 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 FAM107AO95990 144 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 PLAUP00749 431 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 SERPINA1P01009 418 aa11.75□□□□□ -0.53
CLK3-213ENST00000563842 CDH2P19022 906 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms