RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 APOBEC3AP31941 199 aaPredicted RBP16.5■□□□□ 0.23
VPS35-202ENST00000561713 GZMKP49863 264 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 RGS8P57771 180 aaPredicted RBP16.5■□□□□ 0.23
VPS35-202ENST00000561713 NCALDP61601 193 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 ARF1P84077 181 aaKnown RBP16.5■□□□□ 0.23
VPS35-202ENST00000561713 CHRNB3Q05901 458 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 SCARB2Q14108 478 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 GGTLC2Q14390 218 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 CARTPTQ16568 116 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 MST1LQ2TV78 715 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 ALG10BQ5I7T1 473 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 CARD17Q5XLA6 110 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 DHRS4L2Q6PKH6 230 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 MSI2Q96DH6 328 aaKnown RBP16.5■□□□□ 0.23
VPS35-202ENST00000561713 KCNS3Q9BQ31 491 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 CPPED1Q9BRF8 314 aaPredicted RBP16.5■□□□□ 0.23
VPS35-202ENST00000561713 PIF1Q9H611 641 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 KLHL14Q9P2G3 628 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 PMF1-BGLAPU3KQ54 211 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 VWC2LB2RUY7 222 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 LRRN3E7EW58 273 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 AIM2O14862 343 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 TRAF3IP2O43734 574 aaPredicted RBP16.49■□□□□ 0.23
VPS35-202ENST00000561713 ZNF432O94892 652 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 OPN1SWP03999 348 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 BMP4P12644 408 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 IDH3GP51553 393 aaPredicted RBP16.49■□□□□ 0.23
VPS35-202ENST00000561713 NAAAQ02083 359 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 C1DQ13901 141 aaKnown RBP16.49■□□□□ 0.23
VPS35-202ENST00000561713 PHYHD1Q5SRE7 291 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 FAM69AQ5T7M9 428 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 REEP3Q6NUK4 255 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 WDFY1Q8IWB7 410 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 DYDC1Q8WWB3 177 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 SLC38A4Q969I6 547 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 CCDC28BQ9BUN5 200 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 OBP2BQ9NPH6 170 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 CA10Q9NS85 328 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 RCE1Q9Y256 329 aa16.49■□□□□ 0.23
VPS35-202ENST00000561713 TRAV36DV7A0A075B6V5 113 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 ARPC4-TTLL3A0A0A6YYG9 625 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 M0R3H8 397 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SLC43A1O75387 559 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SERPINI2O75830 405 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 HLA-DOBP13765 273 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SNRPD2P62316 118 aaKnown RBP16.48■□□□□ 0.23
VPS35-202ENST00000561713 NPRL3Q12980 569 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SELPLGQ14242 412 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SQLEQ14534 574 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SWI5Q1ZZU3 235 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 CEACAM16Q2WEN9 425 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 ANKRD16Q6P6B7 361 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SLC46A3Q7Z3Q1 461 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 KRT73Q86Y46 540 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 TMEM123Q8N131 208 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 GPR137CQ8N3F9 429 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SMYD1Q8NB12 490 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 SLC35B4Q969S0 331 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 ATP6V1G3Q96LB4 118 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 OXGR1Q96P68 337 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 OR2M2Q96R28 347 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 EMC6Q9BV81 110 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 KATNB1Q9BVA0 655 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 LINC00470Q9BZP3 86 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 GPR35Q9HC97 309 aa16.48■□□□□ 0.23
VPS35-202ENST00000561713 TESQ9UGI8 421 aaKnown RBP16.48■□□□□ 0.23
VPS35-202ENST00000561713 M0R3G1 203 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 TPST2O60704 377 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 FZD7O75084 574 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 TGDSO95455 350 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 CRYAAP02489 173 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 NQO1P15559 274 aaKnown RBP16.47■□□□□ 0.23
VPS35-202ENST00000561713 NR4A2P43354 598 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 CAPZA2P47755 286 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 PDLIM4P50479 330 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 MTPNP58546 118 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 ADIPOQQ15848 244 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 ADRM1Q16186 407 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 LSMEM1Q8N8F7 131 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 MOGAT1Q96PD6 335 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 VRK1Q99986 396 aaPredicted RBP16.47■□□□□ 0.23
VPS35-202ENST00000561713 PIMREGQ9BSJ6 248 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 C12orf10Q9HB07 376 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 NOX3Q9HBY0 568 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 CRLF2Q9HC73 371 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 MED29Q9NX70 200 aa16.47■□□□□ 0.23
VPS35-202ENST00000561713 CRNNQ9UBG3 495 aaPredicted RBP16.47■□□□□ 0.23
VPS35-202ENST00000561713 A0A0B4J2E0 115 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 IGHV4-61A0A0C4DH41 118 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 A0A1B0GX12 115 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 OR6C65A6NJZ3 312 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 IGLV1-44P01699 117 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 BGLAPP02818 100 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 OR4A8P0C604 315 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 APEHP13798 732 aaKnown RBP16.46■□□□□ 0.23
VPS35-202ENST00000561713 PPIBP23284 216 aaKnown RBP16.46■□□□□ 0.23
VPS35-202ENST00000561713 SLC6A2P23975 617 aa16.46■□□□□ 0.23
VPS35-202ENST00000561713 SH3BGRP55822 239 aaPredicted RBP16.46■□□□□ 0.23
VPS35-202ENST00000561713 POU3F1Q03052 451 aaPredicted RBP16.46■□□□□ 0.23
VPS35-202ENST00000561713 OR1Q1Q15612 314 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms