RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 C11orf98E9PRG8 122 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 H3BNX3 289 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 GPR171O14626 319 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 OR10H3O60404 316 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 CLDN1O95832 211 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 SAGP10523 405 aaPredicted RBP19.3■□□□□ 0.68
SNX1-210ENST00000560260 CD8BP10966 210 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 GRNP28799 593 aaKnown RBP19.3■□□□□ 0.68
SNX1-210ENST00000560260 AQP2P41181 271 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 RPL18Q07020 188 aaKnown RBP19.3■□□□□ 0.68
SNX1-210ENST00000560260 ZP4Q12836 540 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 PGBD2Q6P3X8 592 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 ZNF474Q6S9Z5 364 aaPredicted RBP19.3■□□□□ 0.68
SNX1-210ENST00000560260 RRM2BQ7LG56 351 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 ZNF610Q8N9Z0 462 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 TMEM45BQ96B21 275 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 PIGMQ9H3S5 423 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 YY1AP1Q9H869 796 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 PLSCR4Q9NRQ2 329 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 DNAJB9Q9UBS3 223 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 TMEM5Q9Y2B1 443 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 HIF3AQ9Y2N7 669 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 NOSIPQ9Y314 301 aaKnown RBP19.3■□□□□ 0.68
SNX1-210ENST00000560260 FREM1Q5H8C1 2179 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 ADGRG4Q8IZF6 3080 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 SPTBN1Q01082 2364 aaKnown RBP19.29■□□□□ 0.68
SNX1-210ENST00000560260 BLOC1S5-TXNDC5H3BN57 136 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 CCNB2O95067 398 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 AHCYP23526 432 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 IL1RL1Q01638 556 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 POU3F1Q03052 451 aaPredicted RBP19.29■□□□□ 0.68
SNX1-210ENST00000560260 HMBOX1Q6NT76 420 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 HS3ST5Q8IZT8 346 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 OR51A7Q8NH64 312 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 MCCC2Q9HCC0 563 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 NPDC1Q9NQX5 325 aaPredicted RBP19.29■□□□□ 0.68
SNX1-210ENST00000560260 PRSS50Q9UI38 385 aa19.29■□□□□ 0.68
SNX1-210ENST00000560260 A1L4Q6 167 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 A8MXE2 369 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 C19orf84I3L1E1 186 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 MSTNO14793 375 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 CLOCKO15516 846 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 ENTPD5O75356 428 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 SERPINI2O75830 405 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 HIST1H2ABP04908 130 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 ZNF43P17038 809 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 OR3A2P47893 321 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 GSSP48637 474 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 ASCL1P50553 236 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 FXYD6P3P58550 94 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 ATP6AP1Q15904 470 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 C1orf94Q6P1W5 598 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 CASP12Q6UXS9 341 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 HIST3H2AQ7L7L0 130 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 UEVLDQ8IX04 471 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 LRRC75AQ8NAA5 344 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 LRTOMTQ8WZ04 291 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 HIST1H2ACQ93077 130 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 TXNDC15Q96J42 360 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 TNFRSF13CQ96RJ3 184 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 MED29Q9NX70 200 aa19.28■□□□□ 0.68
SNX1-210ENST00000560260 RNF13O43567 381 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 ZNF432O94892 652 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 OR6A2O95222 327 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 F13BP05160 661 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 FPR3P25089 353 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 SLC9A3P48764 834 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 SELENOPP49908 381 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 CLDN17P56750 224 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 C1DQ13901 141 aaKnown RBP19.27■□□□□ 0.68
SNX1-210ENST00000560260 MICAQ29983 383 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 FBXL19-AS1Q494R0 122 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 PXKQ7Z7A4 578 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 OAFQ86UD1 273 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 IGFN1Q86VF2 1251 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 CDK20Q8IZL9 346 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 OR10G2Q8NGC3 310 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 KCNJ16Q9NPI9 418 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 SIGLEC7Q9Y286 467 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 NOX1Q9Y5S8 564 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 HCFC1P51610 2035 aa19.27■□□□□ 0.68
SNX1-210ENST00000560260 GNGT2O14610 69 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 PTP4A3O75365 173 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 MRPL33O75394 65 aaKnown RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 DEAF1O75398 565 aaPredicted RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 IGHV3-9P01782 118 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 DNAJA1P31689 397 aaKnown RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 LGALS3BPQ08380 585 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 MELKQ14680 651 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 AAED1Q7RTV5 226 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 AMIGO2Q86SJ2 522 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 AQP11Q8NBQ7 271 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 ENKD1Q9H0I2 346 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 KRCC1Q9NPI7 259 aaPredicted RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 GALNT8Q9NY28 637 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 MAGED1Q9Y5V3 778 aaPredicted RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 DOPEY2Q9Y3R5 2298 aa19.26■□□□□ 0.67
SNX1-210ENST00000560260 UTP20O75691 2785 aaKnown RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 SPTAN1Q13813 2472 aaKnown RBP19.26■□□□□ 0.67
SNX1-210ENST00000560260 UNC119BA6NIH7 251 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms