RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CPSF4LA6NMK7 179 aaKnown RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 M0QX08 132 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 AIM2O14862 343 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 CECR9P0C854 216 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 CD247P20963 164 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 NUDT6P53370 316 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 IL1RL1Q01638 556 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 TGFBR3Q03167 851 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 NRF1Q16656 503 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 CEACAM16Q2WEN9 425 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 ULK3Q6PHR2 472 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 H1FNTQ75WM6 255 aaPredicted RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 KRT73Q86Y46 540 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 OR10A6Q8NH74 314 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 VANGL1Q8TAA9 524 aaPredicted RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 TAMM41Q96BW9 452 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 FBXO17Q96EF6 278 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 SLC41A3Q96GZ6 507 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 SLC38A2Q96QD8 506 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 MCHR1Q99705 422 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 MDFIQ99750 246 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 SPATA5L1Q9BVQ7 753 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 TMEM120AQ9BXJ8 343 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 KAT8Q9H7Z6 458 aaKnown RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 VIPAS39Q9H9C1 493 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 NOX3Q9HBY0 568 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 TESQ9UGI8 421 aaKnown RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 PRDM4Q9UKN5 801 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 ANGPT4Q9Y264 503 aa15.43■□□□□ 0.06
HDDC3-205ENST00000559898 SONP18583 2426 aaKnown RBP15.43■□□□□ 0.06
HDDC3-205ENST00000559898 M0R3G1 203 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 WNT11O96014 354 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 TNFRSF1BP20333 461 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 GTF2E2P29084 291 aaKnown RBP15.42■□□□□ 0.06
HDDC3-205ENST00000559898 NFYCQ13952 458 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 CYP51A1Q16850 503 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 RABL3Q5HYI8 236 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 SSX8Q7RTT4 187 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 NET1Q7Z628 596 aaPredicted RBP15.42■□□□□ 0.06
HDDC3-205ENST00000559898 OR10H5Q8NGA6 315 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 DNAJA4Q8WW22 397 aaPredicted RBP15.42■□□□□ 0.06
HDDC3-205ENST00000559898 SLC47A1Q96FL8 570 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 ZNF607Q96SK3 696 aa15.42■□□□□ 0.06
HDDC3-205ENST00000559898 JMJD1CQ15652 2540 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ARPC4-TTLL3A0A0A6YYG9 625 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 RPL36A-HNRNPH2H7BZ11 118 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 FXYD1O00168 92 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ANGPT2O15123 496 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 SERPINI2O75830 405 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 APOBEC3AP31941 199 aaPredicted RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 NAAAQ02083 359 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 HGFACQ04756 655 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 C1DQ13901 141 aaKnown RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ETFDHQ16134 617 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 SWI5Q1ZZU3 235 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ENTPD8Q5MY95 495 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 FAM91A1Q658Y4 838 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 HMBOX1Q6NT76 420 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ZNF544Q6NX49 715 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ANKRD16Q6P6B7 361 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 VHLLQ6RSH7 139 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 KLHL24Q6TFL4 600 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 LINC00114Q6XXX2 140 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 DEPDC4Q8N2C3 294 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 LRRC17Q8N6Y2 441 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ANKS4BQ8N8V4 417 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 C11orf65Q8NCR3 313 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 STON2Q8WXE9 905 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ADAD1Q96M93 576 aaKnown RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 SORCS2Q96PQ0 1159 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 TMEM27Q9HBJ8 222 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 CRLF2Q9HC73 371 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 ZNF446Q9NWS9 450 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 GMPR2Q9P2T1 348 aaKnown RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 CRNNQ9UBG3 495 aaPredicted RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 CORO2BQ9UQ03 480 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 RCE1Q9Y256 329 aa15.41■□□□□ 0.06
HDDC3-205ENST00000559898 FBN1P35555 2871 aaKnown RBP15.41■□□□□ 0.06
HDDC3-205ENST00000559898 SLC35F4A4IF30 521 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 PRORSD1PA6NEY8 169 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 H7C417 338 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 OR2T1O43869 369 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 SLC43A1O75387 559 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 IGLV1-44P01699 117 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 NCALDP61601 193 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 POU3F1Q03052 451 aaPredicted RBP15.4■□□□□ 0.06
HDDC3-205ENST00000559898 CAMK2DQ13557 499 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 RAB35Q15286 201 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 NANOGP8Q6NSW7 305 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 ABHD12BQ7Z5M8 362 aaPredicted RBP15.4■□□□□ 0.06
HDDC3-205ENST00000559898 RABEP2Q9H5N1 569 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 NANOGQ9H9S0 305 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 FKRPQ9H9S5 495 aa15.4■□□□□ 0.06
HDDC3-205ENST00000559898 C11orf98E9PRG8 122 aa15.39■□□□□ 0.05
HDDC3-205ENST00000559898 KPNA4O00629 521 aaPredicted RBP15.39■□□□□ 0.05
HDDC3-205ENST00000559898 PLPP3O14495 311 aa15.39■□□□□ 0.05
HDDC3-205ENST00000559898 SHOX2O60902 331 aaPredicted RBP15.39■□□□□ 0.05
HDDC3-205ENST00000559898 SERPINB7O75635 380 aa15.39■□□□□ 0.05
HDDC3-205ENST00000559898 NQO1P15559 274 aaKnown RBP15.39■□□□□ 0.05
HDDC3-205ENST00000559898 FUT4P22083 530 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms