RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OR5AK2Q8NH90 309 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 OR1S1Q8NH92 325 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 FAM46BQ96A09 425 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 POFUT1Q9H488 388 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 OPN4Q9UHM6 478 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ATPIF1Q9UII2 106 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 KCNE5Q9UJ90 142 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SCN5AQ14524 2016 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 TO15178 435 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SPINT1O43278 529 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 NUDT14O95848 222 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 HIST1H2ABP04908 130 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SLC35G6P0C7Q6 338 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 CMPK1P30085 196 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 P2RY2P41231 377 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SREBF2Q12772 1141 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 TRAM1Q15629 374 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ZNF660Q6AZW8 331 aaPredicted RBP10.39□□□□□ -0.75
LDLR-208ENST00000558518 HIST3H2AQ7L7L0 130 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 LRRTM1Q86UE6 522 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 HIST1H2ACQ93077 130 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 FBXO17Q96EF6 278 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 TAS2R5Q9NYW4 299 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SLC6A5Q9Y345 797 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 INSL6Q9Y581 213 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 F8W036 122 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 AIPO00170 330 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ACTC1P68032 377 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ACTA1P68133 377 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 BLOC1S1P78537 153 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 PDGFRLQ15198 375 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 DEFB115Q30KQ5 88 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 LIPNQ5VXI9 398 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 METRNLQ641Q3 311 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 DPY19L4Q7Z388 723 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ASPGQ86U10 573 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SDR16C5Q8N3Y7 309 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 JAGN1Q8N5M9 183 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 CLRN3Q8NCR9 226 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 STEAP2Q8NFT2 490 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 OR2L3Q8NG85 312 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 MRPS24Q96EL2 167 aaKnown RBP10.39□□□□□ -0.75
LDLR-208ENST00000558518 FOXJ3Q9UPW0 622 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 TSPAN11A1L157 253 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 OR6C68A6NDL8 312 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 TMEM200CA6NKL6 621 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 TGM6O95932 706 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 NGFRP08138 427 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 AKR1C4P17516 323 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 ACSM1Q08AH1 577 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 PDSS1Q5T2R2 415 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 STAC2Q6ZMT1 411 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 CDH26Q8IXH8 852 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 NRSN1Q8IZ57 195 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 LINC00518Q8N0U6 118 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 ZNF619Q8N2I2 560 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 LRRC3BQ96PB8 259 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 PRSS16Q9NQE7 514 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 ATXN7L1Q9ULK2 861 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 STON1Q9Y6Q2 735 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 TRAV8-7A0A075B6U6 113 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 OTOL1A6NHN0 477 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 VEGFDO43915 354 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 TPPPO94811 219 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 HPGDP15428 266 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 RBM39Q14498 530 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 ZNF626Q68DY1 528 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 PWWP2BQ6NUJ5 590 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 MRGPREQ86SM8 312 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 OR4S1Q8NGB4 309 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 MARVELD3Q96A59 401 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 SLC6A7Q99884 636 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 VRK1Q99986 396 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 CMSS1Q9BQ75 279 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 PARP12Q9H0J9 701 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 GMEB2Q9UKD1 530 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 ZNF281Q9Y2X9 895 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 MRPS2Q9Y399 296 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 ARHGEF17Q96PE2 2063 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 A0A1B0GV50 99 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 ADAM11O75078 769 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 DCNP07585 359 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 FRKP42685 505 aaPredicted RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 EIF2B1Q14232 305 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 RBMS2Q15434 407 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 GUCA2BQ16661 112 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 RPL22L1Q6P5R6 122 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 TMEM205Q6UW68 189 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 VITQ6UXI7 678 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 KRT77Q7Z794 578 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 PXKQ7Z7A4 578 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 FRMD1Q8N878 549 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 CCL4L1Q8NHW4 92 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 SLC25A36Q96CQ1 311 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 CMKLR1Q99788 373 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 KXD1Q9BQD3 176 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 C7orf50Q9BRJ6 194 aaKnown RBP10.38□□□□□ -0.75
LDLR-208ENST00000558518 SRMSQ9H3Y6 488 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 LDAHQ9H6V9 325 aa10.38□□□□□ -0.75
LDLR-208ENST00000558518 FANCFQ9NPI8 374 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms