RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TBC1D3CQ6IPX1 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 PWWP2BQ6NUJ5 590 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 GLDNQ6ZMI3 551 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3Q8IZP1 549 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 OR52R1Q8NGF1 315 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 NKD1Q969G9 470 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ANKRD19PQ9H560 264 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TCF7L1Q9HCS4 588 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 RABL2BQ9UNT1 228 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 A0A1W2PQU0 124 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 FAM25EA8MYX2 175 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 CACNB4O00305 520 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 SOX1O00570 391 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 F12P00748 615 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 SLC35G6P0C7Q6 338 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 DPP4P27487 766 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 CMPK1P30085 196 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 RPL35P42766 123 aaKnown RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 TAS2R20P59543 309 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TNFRSF17Q02223 184 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 DUSP8Q13202 625 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ARHGAP11BQ3KRB8 267 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 PRRT3Q5FWE3 981 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 FAM78AQ5JUQ0 283 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 METTL11BQ5VVY1 283 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ESX1Q8N693 406 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 SPACA7Q96KW9 195 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ZNF75AQ96N20 296 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ZNF350Q9GZX5 532 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 FOXJ3Q9UPW0 622 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 FARSAQ9Y285 508 aaKnown RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 V9GY05 133 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 EML5Q05BV3 1969 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 TRAV18A0A075B6X5 111 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 TMEM272A0A1B0GTI8 110 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 ZNF879B4DU55 563 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 RP2O75695 350 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 PLGP00747 810 aaPredicted RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 S100A11P31949 105 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 ACTR1BP42025 376 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 ACTR1AP61163 376 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 SEC61A1P61619 476 aaKnown RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 SGCGQ13326 291 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 FHL1Q13642 323 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 NKPD1Q17RQ9 610 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 RGS7BPQ6MZT1 257 aaPredicted RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 SEZ6L2Q6UXD5 910 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 BIVMQ86UB2 503 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 OR2L13Q8N349 312 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 PLPP7Q8NBV4 271 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 OR2L8Q8NGY9 312 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 LHFPL5Q8TAF8 219 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 S100A16Q96FQ6 103 aaKnown RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 WDR13Q9H1Z4 485 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 SRMSQ9H3Y6 488 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 C12orf10Q9HB07 376 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 NPDC1Q9NQX5 325 aaPredicted RBP11.27□□□□□ -0.6
LDLR-205ENST00000557933 ABRACLQ9P1F3 81 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 COPZ2Q9P299 210 aa11.27□□□□□ -0.6
LDLR-205ENST00000557933 RP1P56715 2156 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 TOR1AO14656 332 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 PTP4A3O75365 173 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 RDH16O75452 317 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 CD3DP04234 171 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 GTF2F2P13984 249 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 SPI1P17947 270 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 PPP2CBP62714 309 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 TRA2BP62995 288 aaKnown RBP11.27□□□□□ -0.61
LDLR-205ENST00000557933 PPP2CAP67775 309 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 MAT1AQ00266 395 aaKnown RBP11.27□□□□□ -0.61
LDLR-205ENST00000557933 GAS6Q14393 721 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 LIPNQ5VXI9 398 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 ADAMTSL4Q6UY14 1074 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 STAC2Q6ZMT1 411 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 ETFBKMTQ8IXQ9 262 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 LRIT1Q9P2V4 623 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 DAPP1Q9UN19 280 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 HRH3Q9Y5N1 445 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 WDFY4Q6ZS81 3184 aa11.27□□□□□ -0.61
LDLR-205ENST00000557933 URB1O60287 2271 aaKnown RBP11.26□□□□□ -0.61
LDLR-205ENST00000557933 C1QTNF3-AMACRE9PGA6 284 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 ZNF273Q14593 569 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 SHHQ15465 462 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 GAB4Q2WGN9 574 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 C9orf50Q5SZB4 431 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 FCRL6Q6DN72 434 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 ENPP7Q6UWV6 458 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 TMEM184AQ6ZMB5 413 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 DPY19L4Q7Z388 723 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 TMIEQ8NEW7 156 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 OR4C3Q8NH37 302 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 FGF13Q92913 245 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 TMEM106AQ96A25 262 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 AMELYQ99218 206 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 WDR76Q9H967 626 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 RABL2AQ9UBK7 228 aaPredicted RBP11.26□□□□□ -0.61
LDLR-205ENST00000557933 AIPO00170 330 aa11.26□□□□□ -0.61
LDLR-205ENST00000557933 OR10H2O60403 315 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms