RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TUBG2Q9NRH3 451 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 MRPL22Q9NWU5 206 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF580Q9UK33 172 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 STAP1Q9ULZ2 295 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PRELID1Q9Y255 219 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PLLPQ9Y342 182 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RPL36Q9Y3U8 105 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 INSRP06213 1382 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PLEKHH1Q9ULM0 1364 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 MRC2Q9UBG0 1479 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SNED1Q8TER0 1413 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 TRBV11-1A0A0K0K1C0 115 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CCDC182A6NF36 153 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SMCO2A6NFE2 343 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 OR5B21A6NL26 309 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 LRRIQ3A6PVS8 624 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 IQCF5A8MTL0 148 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 A8MX80 341 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 FAM220BPB1ANY3 271 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 WWP2O00308 870 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 DCTN6O00399 190 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 RRP8O43159 456 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 UGT1A9O60656 530 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CLPXO76031 633 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 MBP02144 154 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 UBTFL1P0CB47 393 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ABOP16442 354 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 DPEP1P16444 411 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 NPR2P20594 1047 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 VDAC1P21796 283 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 GTF2E2P29084 291 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CALCRP30988 508 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 OTX1P32242 354 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 IFNA8P32881 189 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 GCKP35557 465 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 MAGEA9P43362 315 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 KPNA2P52292 529 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CRIP2P52943 208 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 MYL6P60660 151 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 LMO4P61968 165 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 RPL32P62910 135 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 IRX1P78414 480 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SLC10A7Q0GE19 358 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 DGUOKQ16854 277 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 HSP90AA4PQ58FG1 418 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 PLCXD3Q63HM9 321 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 TTC23LQ6PF05 361 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SCARA5Q6ZMJ2 495 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SSX9Q7RTT3 188 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SCD5Q86SK9 330 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 MARCH9Q86YJ5 346 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 NAXDQ8IW45 347 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 NRMQ8IXM6 262 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 GPR65Q8IYL9 337 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 MICU2Q8IYU8 434 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 GABRG1Q8N1C3 465 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ACOT4Q8N9L9 421 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CSNK1G2-AS1Q8NCQ2 148 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 OR52I1Q8NGK6 324 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CCDC26Q8TAB7 109 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 LRRC20Q8TCA0 184 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 SETD7Q8WTS6 366 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ZNF707Q96C28 371 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 LINC00479Q96M42 142 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 P2RY13Q9BPV8 354 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 RBM4BQ9BQ04 359 aaKnown RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 KLHDC3Q9BQ90 382 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 NMUR2Q9GZQ4 415 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 HDHD2Q9H0R4 259 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 TMEM165Q9HC07 324 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 C20orf96Q9NUD7 363 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ATPIF1Q9UII2 106 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 NUP50Q9UKX7 468 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ZNF608Q9ULD9 1512 aaPredicted RBP2.46□□□□□ -2.02
TRAV28-201ENST00000557548 ANKRD30BQ9BXX2 1392 aa2.46□□□□□ -2.02
TRAV28-201ENST00000557548 CNTNAP2Q9UHC6 1331 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 NDUFAF8A1L188 74 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 DHRS7CA6NNS2 312 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 GABRR3A8MPY1 467 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 H0YHG0 523 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 CDX4O14627 284 aaPredicted RBP2.45□□□□□ -2.02
TRAV28-201ENST00000557548 GOSR2O14653 212 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 RAB29O14966 203 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 PPP1R2P9O14990 202 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 ZW10O43264 779 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 MBTPS2O43462 519 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 CBR3O75828 277 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 CABYRO75952 493 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 KBTBD11O94819 623 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 CDK14O94921 469 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 TSPAN13O95857 204 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 PLEKP08567 350 aaPredicted RBP2.45□□□□□ -2.02
TRAV28-201ENST00000557548 CCNB1P14635 433 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 HOXB6P17509 224 aaKnown RBP2.45□□□□□ -2.02
TRAV28-201ENST00000557548 SRMP19623 302 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 GSTM3P21266 225 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 IL12AP29459 219 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 SHMT2P34897 504 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 RORAP35398 523 aa2.45□□□□□ -2.02
TRAV28-201ENST00000557548 DDOSTP39656 456 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms