RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 C2orf42Q9NWW7 574 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 PILRAQ9UKJ1 303 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 SCML1Q9UN30 329 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 SLC6A5Q9Y345 797 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 TRBV5-5A0A0J9YX44 114 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 ACOD1A6NK06 481 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 H7C417 338 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 CYR61O00622 381 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 MAGEB4O15481 346 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-232ENST00000557487 XRCC3O43542 346 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 RBBP9O75884 186 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 ZFPL1O95159 310 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 KAT7O95251 611 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 APEHP13798 732 aaKnown RBP14.9□□□□□ -0.02
SHMT2-232ENST00000557487 PSMB10P40306 273 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 TMUB2Q71RG4 321 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 SLC16A9Q7RTY1 509 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 PCNPQ8WW12 178 aaKnown RBP14.9□□□□□ -0.02
SHMT2-232ENST00000557487 PIGKQ92643 395 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 RERGQ96A58 199 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-232ENST00000557487 RXFP3Q9NSD7 469 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 MTFP1Q9UDX5 166 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 OPN4Q9UHM6 478 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 PCDHGA5Q9Y5G8 931 aa14.9□□□□□ -0.02
SHMT2-232ENST00000557487 COL4A2P08572 1712 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 A0A087WUJ7 227 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 A0A1W2PP55 124 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 SYNDIG1LA6NDD5 238 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 SELENOFO60613 162 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 LDB3O75112 727 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 FGF2P09038 288 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 SLC35E2P0CK97 266 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 GABRA1P14867 456 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 ANXA7P20073 488 aaKnown RBP14.89□□□□□ -0.03
SHMT2-232ENST00000557487 KIAA1024LP59773 190 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 GK2Q14410 553 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF776Q68DI1 518 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-232ENST00000557487 FIGLAQ6QHK4 219 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 TFAP2EQ6VUC0 442 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 SLC36A1Q7Z2H8 476 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF417Q8TAU3 575 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 LINC00052Q96N35 136 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 PTCHD1Q96NR3 888 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 ZFYVE21Q9BQ24 234 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 SLC25A18Q9H1K4 315 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 CDCP1Q9H5V8 836 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 ZC4H2Q9NQZ6 224 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 CHD7Q9P2D1 2997 aa14.89□□□□□ -0.03
SHMT2-232ENST00000557487 PRSS38A1L453 326 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 IMPA2O14732 288 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 CTSVO60911 334 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 DCTDP32321 178 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 RPS4XP62701 263 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ID2Q02363 134 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ALKBH1Q13686 389 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 EXOSC7Q15024 291 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR5M10Q6IEU7 315 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 KRT77Q7Z794 578 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF227Q86WZ6 799 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF440Q8IYI8 595 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR6M1Q8NGM8 313 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR6N1Q8NGY5 312 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR5AK2Q8NH90 309 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 RGP1Q92546 391 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 NMNAT3Q96T66 252 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 SMAD5Q99717 465 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 LDAHQ9H6V9 325 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 TBC1D29Q9UFV1 150 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 SERGEFQ9UGK8 458 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 SNRNP200O75643 2136 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 A0A1W2PQU0 124 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 F5H5P2 479 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 TSPAN4O14817 238 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 PLRG1O43660 514 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 IL32P24001 234 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 EMDP50402 254 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 NANOS3P60323 173 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 DBPQ10586 325 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 COL9A2Q14055 689 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 LINC01590Q5TEZ4 76 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 FCRL6Q6DN72 434 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 GSG1LQ6UXU4 331 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 DGLUCYQ7Z3D6 616 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 SERPINA12Q8IW75 414 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 PDZD9Q8IXQ8 264 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF595Q8IYB9 648 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 SDR16C5Q8N3Y7 309 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ZNF614Q8N883 585 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR51L1Q8NGJ5 315 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 OR6K6Q8NGW6 343 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ASB12Q8WXK4 309 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ST8SIA4Q92187 359 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 FAM131CQ96AQ9 280 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 PELOQ9BRX2 385 aaKnown RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 G6PC3Q9BUM1 346 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ALX4Q9H161 411 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-232ENST00000557487 ACTR10Q9NZ32 417 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 CYB5R1Q9UHQ9 305 aa14.88□□□□□ -0.03
SHMT2-232ENST00000557487 MYO9BQ13459 2157 aa14.87□□□□□ -0.03
SHMT2-232ENST00000557487 OR6C68A6NDL8 312 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms