RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RANBP3Q9H6Z4 567 aaPredicted RBP1.85□□□□□ -2.11
SCFD1-218ENST00000556256 PLGRKTQ9HBL7 147 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 EML4Q9HC35 981 aaKnown RBP1.85□□□□□ -2.11
SCFD1-218ENST00000556256 IL26Q9NPH9 171 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 HYPKQ9NX55 129 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 GIN1Q9NXP7 522 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 BFARQ9NZS9 450 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 COX16Q9P0S2 106 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 ZNF225Q9UK10 706 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 TMCO1Q9UM00 188 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 KCNIP3Q9Y2W7 256 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 LTBP1Q14766 1721 aa1.85□□□□□ -2.11
SCFD1-218ENST00000556256 IGLV3-22A0A075B6J6 115 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 A0A0G2JN53 185 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 KIR2DL5BA0A0G2JN68 375 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 KIR2DL5BA0A0G2JPC4 375 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 A0A1B0GUA9 196 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 A0A1B0GVL5 298 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 FAM240BA0A1B0GVZ2 78 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 GJE1A6NN92 205 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 TRIM49D1C9J1S8 452 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 C12orf77C9JDV5 145 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 C1orf105O95561 183 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 P04436 131 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 FGF1P05230 155 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ETS2P15036 469 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 CRISP2P16562 243 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 CD1CP29017 333 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 BTCP35070 178 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 FDFT1P37268 417 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 YAP1P46937 504 aaKnown RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 SCRN3Q0VDG4 424 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 GK3PQ14409 553 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 CYTH1Q15438 398 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 MPPED2Q15777 294 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ZNF658BQ4V348 819 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 BOLA3Q53S33 107 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 PHYHD1Q5SRE7 291 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 Q6ZN92 141 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ZNF620Q6ZNG0 422 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 SLC25A48Q6ZT89 311 aaKnown RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ZNF571Q7Z3V5 609 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 PAQR7Q86WK9 346 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ECHDC2Q86YB7 292 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 EGFL6Q8IUX8 553 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 NUDCD3Q8IVD9 361 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 TMEM61Q8N0U2 210 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 KIR2DL5AQ8N109 375 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 TPRX1Q8N7U7 411 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 VN1R2Q8NFZ6 395 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 BLOC1S5Q8TDH9 187 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 LRRC58Q96CX6 371 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ZNF641Q96N77 438 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 OR2M2Q96R28 347 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 CNN2Q99439 309 aaKnown RBP1.84□□□□□ -2.11
SCFD1-218ENST00000556256 RASL11BQ9BPW5 248 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 NAT9Q9BTE0 207 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 ACTR6Q9GZN1 396 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 NMRAL1Q9HBL8 299 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 NEU3Q9UQ49 428 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 TRAF3IP3Q9Y228 551 aa1.84□□□□□ -2.11
SCFD1-218ENST00000556256 KANK1Q14678 1352 aa1.84□□□□□ -2.12
SCFD1-218ENST00000556256 SYNJ2BP-COX16A0A087WUM0 186 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 RBMY1BA6NDE4 496 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 RBMY1EA6NEQ0 496 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 CCDC182A6NF36 153 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 ERVV-1B6SEH8 477 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 HAS3O00219 553 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 MAGEB4O15481 346 aaPredicted RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 OR7A10O76100 309 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 RBMY1DP0C7P1 496 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 RBMY1A1P0DJD3 496 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PSG2P11465 335 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 ATP1B2P14415 290 aaPredicted RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 EPS15P42566 896 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 NPBWR2P48146 333 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 ACVR1Q04771 509 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PPIL2Q13356 520 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 UNC119Q13432 240 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 DDX39BQ13838 428 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 KIAA0087Q14695 138 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 TMEM255AQ5JRV8 349 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 GPR157Q5UAW9 335 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 C6orf89Q6UWU4 347 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 MKXQ8IYA7 352 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PYROXD1Q8WU10 500 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 SRSF12Q8WXF0 261 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 NDRG1Q92597 394 aaKnown RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 RNF185Q96GF1 192 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PANX2Q96RD6 677 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PPA2Q9H2U2 334 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 ZNF331Q9NQX6 463 aaPredicted RBP1.83□□□□□ -2.12
SCFD1-218ENST00000556256 CALYQ9NYX4 217 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 KCNIP1Q9NZI2 227 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 XCL2Q9UBD3 114 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 PEX16Q9Y5Y5 336 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 NPTNQ9Y639 398 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 CACNG2Q9Y698 323 aa1.83□□□□□ -2.12
SCFD1-218ENST00000556256 FANCIQ9NVI1 1328 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms