RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SDC2P34741 201 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 OR12D2P58182 307 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 MESTQ5EB52 335 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 SSX6Q7RTT6 188 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 GHDCQ8N2G8 530 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 SNX18Q96RF0 628 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 TAAR9Q96RI9 348 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 CPNE5Q9HCH3 593 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 MRPL39Q9NYK5 338 aaKnown RBP23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 TP53I11O14683 189 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 SERPINI2O75830 405 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 SULT1C4O75897 302 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 NAA10P41227 235 aaPredicted RBP23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 MFSD13AQ14CX5 517 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 CDONQ4KMG0 1287 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 BICRALQ6AI39 1079 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 OR6K6Q8NGW6 343 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 SMAP2Q8WU79 429 aaPredicted RBP23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 HDHD5Q9BXW7 423 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 PADI1Q9ULC6 663 aa23.8■■□□□ 1.4
CCDC88C-205ENST00000553403 FTCDNL1E5RQL4 147 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 CBFA2T3O75081 653 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 RGS21Q2M5E4 152 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 TMEM81Q6P7N7 255 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 C6orf15Q6UXA7 325 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 NDUFAF7Q7L592 441 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 RAB11FIP2Q7L804 512 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 CCDC190Q86UF4 302 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 OR2T4Q8NH00 348 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 CHPT1Q8WUD6 406 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 MRGPRX4Q96LA9 322 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 DDA1Q9BW61 102 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 OR11A1Q9GZK7 315 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 KCNN2Q9H2S1 579 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 WDR87Q6ZQQ6 2873 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 E9PI62 339 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 PLPP3O14495 311 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 ITGA10O75578 1167 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 IGHMP01871 453 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 CLEC2LP0C7M8 214 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 PYCR1P32322 319 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 CASP3P42574 277 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNF41P51814 821 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 INSM1Q01101 510 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 MXD1Q05195 221 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 OPN5Q6U736 354 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 ARSKQ6UWY0 536 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 TMEM91Q6ZNR0 172 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 OR11G2Q8NGC1 345 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 MFSD8Q8NHS3 518 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 LIN37Q96GY3 246 aaPredicted RBP23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 PCNX3Q9H6A9 2034 aa23.79■■□□□ 1.4
CCDC88C-205ENST00000553403 C4orf47A7E2U8 309 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 CTDSP2O14595 271 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 SELENOFO60613 162 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 TRIM3O75382 744 aaPredicted RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 OR6A2O95222 327 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 RAB40ALP0C0E4 278 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNF806P0C7X5 589 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 F8A1P23610 371 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 CALRP27797 417 aaKnown RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 GBX2P52951 348 aaPredicted RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 HCCSP53701 268 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 FOXF1Q12946 379 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 HNRNPA0Q13151 305 aaKnown RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 SNTA1Q13424 505 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 CDCP2Q5VXM1 449 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 DMKNQ6E0U4 476 aaPredicted RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 SLC16A9Q7RTY1 509 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 DND1Q8IYX4 353 aaKnown RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 SYT14Q8NB59 555 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 DDIT4LQ96D03 193 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 CEP19Q96LK0 163 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 DCLRE1CQ96SD1 692 aaKnown RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 POTEKPQ9BYX7 375 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 TXNIPQ9H3M7 391 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 TPK1Q9H3S4 243 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 QPCTLQ9NXS2 382 aa23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 EP300Q09472 2414 aaPredicted RBP23.78■■□□□ 1.4
CCDC88C-205ENST00000553403 NSG1A0A0A6YYJ2 146 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 C11orf98E9PRG8 122 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 OGG1O15527 345 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 DLGAP3O95886 979 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 RPL27P61353 136 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 ZP4Q12836 540 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 SF3A2Q15428 464 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 ARL9Q6T311 187 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 EGFL6Q8IUX8 553 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 RFLNBQ8N5W9 214 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 PARP16Q8N5Y8 322 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 OR2M3Q8NG83 312 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 SNX33Q8WV41 574 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 THAP4Q8WY91 577 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 WDFY2Q96P53 400 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 PLEKHB1Q9UF11 243 aaPredicted RBP23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 ST6GALNAC2Q9UJ37 374 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 HRH3Q9Y5N1 445 aa23.77■■□□□ 1.4
CCDC88C-205ENST00000553403 CD8B2A6NJW9 211 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 XKRYO14609 159 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CD1AP06126 327 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms