RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 HMBOX1Q6NT76 420 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 KLHL24Q6TFL4 600 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 DEF8Q6ZN54 512 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 DEPDC4Q8N2C3 294 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF611Q8N823 705 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 ANKS4BQ8N8V4 417 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 OR52N5Q8NH56 324 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 AKAP1Q92667 903 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT2-204ENST00000553324 LRR1Q96L50 414 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 CCL19Q99731 98 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 KCTD14Q9BQ13 255 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-204ENST00000553324 SLC17A5Q9NRA2 495 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 ABCD2Q9UBJ2 740 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 SEC14L4Q9UDX3 406 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 RIMS3Q9UJD0 308 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF229Q9UJW7 825 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 FREM1Q5H8C1 2179 aa13.48□□□□□ -0.25
SHMT2-204ENST00000553324 AKAP6Q13023 2319 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 DPRXA6NFQ7 191 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF726A6NNF4 738 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 RPL36A-HNRNPH2H7BZ11 118 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 NME4O00746 187 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 CLOCKO15516 846 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 SMPD2O60906 423 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF432O94892 652 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 LYPD3O95274 346 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 CH25HO95992 272 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 MT-ND1P03886 318 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 AHCYP23526 432 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 OR1E2P47887 323 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 GSK3BP49841 420 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 MNAT1P51948 309 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 BSPH1Q075Z2 132 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ST3GAL3Q11203 375 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ZP4Q12836 540 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 PIN1Q13526 163 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF74Q16587 644 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 C9orf135Q5VTT2 229 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 LRRC75A-AS1Q8N1F1 130 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 GPR137CQ8N3F9 429 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 MOGAT1Q96PD6 335 aa13.47□□□□□ -0.25
SHMT2-204ENST00000553324 ARHGEF9O43307 516 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 UPK3AO75631 287 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 PLAUP00749 431 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 IFNW1P05000 195 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ADORA3P0DMS8 318 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 CDH2P19022 906 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 FOXG1P55316 489 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ROR2Q01974 943 aaKnown RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ZNF672Q499Z4 452 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 SHEQ5VZ18 495 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ANKRD16Q6P6B7 361 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 SEZ6L2Q6UXD5 910 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 WDR88Q6ZMY6 472 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 FKBP9P1Q75LS8 142 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 CBLL1Q75N03 491 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 LSRQ86X29 649 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 WDR31Q8NA23 367 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 MAGEE2Q8TD90 523 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 TMEM239Q8WW34 195 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 GEMIN6Q8WXD5 167 aaKnown RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 FBXW5Q969U6 566 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 FAM162AQ96A26 154 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ADAD1Q96M93 576 aaKnown RBP13.46□□□□□ -0.25
SHMT2-204ENST00000553324 CCT8L2Q96SF2 557 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 PRSS27Q9BQR3 290 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 CXorf56Q9H5V9 222 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 B3GAT2Q9NPZ5 323 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 NDE1Q9NXR1 346 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 ADA2Q9NZK5 511 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 TAGLN3Q9UI15 199 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 RPS6KA6Q9UK32 745 aa13.46□□□□□ -0.25
SHMT2-204ENST00000553324 HRNRQ86YZ3 2850 aaPredicted RBP13.46□□□□□ -0.26
SHMT2-204ENST00000553324 TRAF3IP2O43734 574 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 ZNF682O95780 498 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 UMPSP11172 480 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 TNFRSF1BP20333 461 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 CD40P25942 277 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 UBE2NP61088 152 aaKnown RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 POU3F1Q03052 451 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 IFI44LQ53G44 452 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 GKAP1Q5VSY0 366 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 TSPYL5Q86VY4 417 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 CCDC36Q8IYA8 594 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 C20orf196Q8IYI0 205 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 OR1K1Q8NGR3 316 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 TMEM171Q8WVE6 324 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 PRRC1Q96M27 445 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 ALKBH3Q96Q83 286 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-204ENST00000553324 OR2M2Q96R28 347 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 FAIMQ9NVQ4 179 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 NPAP1Q9NZP6 1156 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 MED31Q9Y3C7 131 aa13.45□□□□□ -0.26
SHMT2-204ENST00000553324 SLC35F4A4IF30 521 aa13.44□□□□□ -0.26
SHMT2-204ENST00000553324 LRRN3E7EW58 273 aa13.44□□□□□ -0.26
SHMT2-204ENST00000553324 KPNA4O00629 521 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-204ENST00000553324 ABCD4O14678 606 aa13.44□□□□□ -0.26
SHMT2-204ENST00000553324 RNF13O43567 381 aa13.44□□□□□ -0.26
SHMT2-204ENST00000553324 SHOX2O60902 331 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-204ENST00000553324 HPRP00739 348 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms