RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	HLA-B	Q31612	363 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	NDUFAF6	Q330K2	333 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	CNOT9	Q92600	299 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	KISS1R	Q969F8	398 aa	Predicted RBP	13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	SFXN2	Q96NB2	322 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	LRRN3	Q9H3W5	708 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	EXTL2	Q9UBQ6	330 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	DTX4	Q9Y2E6	619 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	IGHV1OR21-1	A0A087WYE8	117 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	UNC119B	A6NIH7	251 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	LINC00587	B1AMM8	73 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	LGALS8	O00214	317 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	CYR61	O00622	381 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	BHLHE40	O14503	412 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	RDH16	O75452	317 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	SFTPC	P11686	197 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	GLB1	P16278	677 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	ELK1	P19419	428 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	RPL35	P42766	123 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	EMD	P50402	254 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	OR10A3	P58181	314 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	BPIFB3	P59826	476 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	E2F1	Q01094	437 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	MGAT2	Q10469	447 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	AMZ1	Q400G9	498 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	GXYLT1	Q4G148	440 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	MANEA	Q5SRI9	462 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	USP53	Q70EK8	1073 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	FGD2	Q7Z6J4	655 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	OR10H4	Q8NGA5	316 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	OR51L1	Q8NGJ5	315 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	OR13C5	Q8NGS8	318 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	OR2T35	Q8NGX2	323 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	TMEM239	Q8WW34	195 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	ADAMTS14	Q8WXS8	1223 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	TCTN2	Q96GX1	697 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	CXorf58	Q96LI9	332 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	BCL2L14	Q9BZR8	327 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	NTM	Q9P121	344 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	C19orf53	Q9UNZ5	99 aa	Predicted RBP	13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	ADAMTS9	Q9P2N4	1935 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	ALPK2	Q86TB3	2170 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	TRAV20	A0A0B4J274	112 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268		A0A1B0GTQ1	180 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	CDHR4	A6H8M9	788 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	TLCD2	A6NGC4	264 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	PATE3	B3GLJ2	98 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268		G3V3Q6	166 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268		J3QRE1	110 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	IGHA1	P01876	353 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	SYP	P08247	313 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	NMB	P08949	121 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	SAG	P10523	405 aa	Predicted RBP	13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	AKR1D1	P51857	326 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	RAG2	P55895	527 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	RPS7	P62081	194 aa	Known RBP	13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	CFHR1	Q03591	330 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	PRICKLE4	Q2TBC4	344 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	HACD4	Q5VWC8	232 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	NIPAL3	Q6P499	406 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	SSX6	Q7RTT6	188 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF619	Q8N2I2	560 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	KLHL36	Q8N4N3	616 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	BMPER	Q8N8U9	685 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	BVES	Q8NE79	360 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	C17orf47	Q8NEP4	570 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	OR9A4	Q8NGU2	314 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	ACOT12	Q8WYK0	555 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	ZC3H10	Q96K80	434 aa	Known RBP	13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	FLRT3	Q9NZU0	649 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	FBXO4	Q9UKT5	387 aa		13.71	□□□□□ -0.21
CHFR-223	ENST00000544268	EXOG	Q9Y2C4	368 aa	Known RBP	13.71	□□□□□ -0.21
CHFR-223	ENST00000544268		A0A1W2PPK0	400 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	AIP	O00170	330 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	PDCD5	O14737	125 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	PLAT	P00750	562 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	IGKV1D-16	P01601	117 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	APOC1	P02654	83 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	NUBP1	P53384	320 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ST3GAL2	Q16842	350 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	FAM198B	Q6UWH4	519 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	C17orf107	Q6ZR85	190 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	SYT9	Q86SS6	491 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ARHGEF39	Q8N4T4	335 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ZDHHC12	Q96GR4	267 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	PEX11G	Q96HA9	241 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ALG8	Q9BVK2	526 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	IFT27	Q9BW83	186 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ZCCHC4	Q9H5U6	513 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	ENAM	Q9NRM1	1142 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	SOHLH2	Q9NX45	425 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	NLGN3	Q9NZ94	848 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	H2AFY2	Q9P0M6	372 aa	Predicted RBP	13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	COPZ2	Q9P299	210 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	EPHA6	Q9UF33	1036 aa		13.71	□□□□□ -0.22
CHFR-223	ENST00000544268	TRAPPC13	A5PLN9	417 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	MPTX1	A8MV57	137 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	TGFBR3L	H3BV60	316 aa		13.7	□□□□□ -0.22
CHFR-223	ENST00000544268	GALR3	O60755	368 aa	Predicted RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms